miRNA display CGI


Results 21 - 40 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29479 3' -68 NC_006151.1 + 73122 0.66 0.376532
Target:  5'- gCGCGCCCGCGCgggUUgCACgCGCGC-Cg -3'
miRNA:   3'- -GUGCGGGCGCGg--GGgGUGgGCGCGaG- -5'
29479 3' -68 NC_006151.1 + 54947 0.66 0.376532
Target:  5'- aCGCGCUgcgcgagcaCGCGCgCCUCugCCaGCuGCUCa -3'
miRNA:   3'- -GUGCGG---------GCGCGgGGGGugGG-CG-CGAG- -5'
29479 3' -68 NC_006151.1 + 97171 0.66 0.368961
Target:  5'- aGCGCUCG-GCCCggCGCacgaCGCGCUCg -3'
miRNA:   3'- gUGCGGGCgCGGGggGUGg---GCGCGAG- -5'
29479 3' -68 NC_006151.1 + 25431 0.66 0.368961
Target:  5'- gCGCGCCCGUcaUCCCUC-CCCGCGg-- -3'
miRNA:   3'- -GUGCGGGCGc-GGGGGGuGGGCGCgag -5'
29479 3' -68 NC_006151.1 + 43081 0.66 0.368961
Target:  5'- cCGCGUguCCGCuCCCCCCcguguCgCGCGCUg -3'
miRNA:   3'- -GUGCG--GGCGcGGGGGGu----GgGCGCGAg -5'
29479 3' -68 NC_006151.1 + 80528 0.66 0.368961
Target:  5'- gGCGCuccCCGCaucCCCUCCACCCGaCuCUCg -3'
miRNA:   3'- gUGCG---GGCGc--GGGGGGUGGGC-GcGAG- -5'
29479 3' -68 NC_006151.1 + 109774 0.66 0.368961
Target:  5'- gGCGCCCGCaccaCCCCCGagcuCCCGCcggaGUUUg -3'
miRNA:   3'- gUGCGGGCGcg--GGGGGU----GGGCG----CGAG- -5'
29479 3' -68 NC_006151.1 + 114264 0.66 0.368961
Target:  5'- gCGCGCCCucgaggagGUGCUCgCgCACCCGgaGCUCu -3'
miRNA:   3'- -GUGCGGG--------CGCGGGgG-GUGGGCg-CGAG- -5'
29479 3' -68 NC_006151.1 + 115110 0.66 0.368961
Target:  5'- cCAgGCCgGCGCCgCCgGCgaCGCGCg- -3'
miRNA:   3'- -GUgCGGgCGCGGgGGgUGg-GCGCGag -5'
29479 3' -68 NC_006151.1 + 51650 0.66 0.368961
Target:  5'- aUAUGCUCGCugauGCCguugUCCCGCUCGgGCUCc -3'
miRNA:   3'- -GUGCGGGCG----CGG----GGGGUGGGCgCGAG- -5'
29479 3' -68 NC_006151.1 + 59487 0.66 0.368961
Target:  5'- gGCGCCCucgaagagcccgGCGgCCUCCGCgaCGCGCg- -3'
miRNA:   3'- gUGCGGG------------CGCgGGGGGUGg-GCGCGag -5'
29479 3' -68 NC_006151.1 + 86919 0.66 0.368961
Target:  5'- aGCGCCCgGCGCCCagccuggaguCCCAgCUCgGCGCcaUCg -3'
miRNA:   3'- gUGCGGG-CGCGGG----------GGGU-GGG-CGCG--AG- -5'
29479 3' -68 NC_006151.1 + 121873 0.66 0.36821
Target:  5'- gACGCCgcucacgUGCGCgCUgCGCCUGgCGCUCg -3'
miRNA:   3'- gUGCGG-------GCGCGgGGgGUGGGC-GCGAG- -5'
29479 3' -68 NC_006151.1 + 107586 0.66 0.36821
Target:  5'- gACuCCCGcCGCCaagcuggCCCCGCCgGCGC-Cg -3'
miRNA:   3'- gUGcGGGC-GCGG-------GGGGUGGgCGCGaG- -5'
29479 3' -68 NC_006151.1 + 34252 0.66 0.361495
Target:  5'- --gGUCuCGCGCCCCCUcccGCCCGCcCg- -3'
miRNA:   3'- gugCGG-GCGCGGGGGG---UGGGCGcGag -5'
29479 3' -68 NC_006151.1 + 50671 0.66 0.361495
Target:  5'- gCGCGgCCGCa-CCCCCGCgCCGcCGCg- -3'
miRNA:   3'- -GUGCgGGCGcgGGGGGUG-GGC-GCGag -5'
29479 3' -68 NC_006151.1 + 90063 0.66 0.360754
Target:  5'- gCGCGCCUcgguGCGCacguucacgagggCCCCCGCCgCGcCGCa- -3'
miRNA:   3'- -GUGCGGG----CGCG-------------GGGGGUGG-GC-GCGag -5'
29479 3' -68 NC_006151.1 + 107861 0.66 0.359276
Target:  5'- gGCGCCCGagacgGCCCCCCcggaggccccccagGCCCaGcCGCcCg -3'
miRNA:   3'- gUGCGGGCg----CGGGGGG--------------UGGG-C-GCGaG- -5'
29479 3' -68 NC_006151.1 + 99626 0.66 0.357067
Target:  5'- aGCGCCgCGCGCgaggCCCUCAacacguggcucgccuUCCGCGCg- -3'
miRNA:   3'- gUGCGG-GCGCG----GGGGGU---------------GGGCGCGag -5'
29479 3' -68 NC_006151.1 + 36246 0.66 0.357067
Target:  5'- --aGCCCGgGUCCCCgGCCgccgggucccccgguCGgGCUCu -3'
miRNA:   3'- gugCGGGCgCGGGGGgUGG---------------GCgCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.