Results 1 - 20 of 341 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29479 | 3' | -68 | NC_006151.1 | + | 136844 | 0.66 | 0.391985 |
Target: 5'- aCGCGgCCGCcgGCCUCgCGCgCCGCGUg- -3' miRNA: 3'- -GUGCgGGCG--CGGGGgGUG-GGCGCGag -5' |
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29479 | 3' | -68 | NC_006151.1 | + | 126388 | 0.66 | 0.391985 |
Target: 5'- gCGgGCCCGCGCUgCuggCCAgCCGCGUc- -3' miRNA: 3'- -GUgCGGGCGCGGgG---GGUgGGCGCGag -5' |
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29479 | 3' | -68 | NC_006151.1 | + | 107997 | 0.66 | 0.391985 |
Target: 5'- gCGCaGCCCGCcaccGCCgCCgCCACCacCGCGCcCa -3' miRNA: 3'- -GUG-CGGGCG----CGG-GG-GGUGG--GCGCGaG- -5' |
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29479 | 3' | -68 | NC_006151.1 | + | 41592 | 0.66 | 0.391985 |
Target: 5'- uGCGaUCCGCGgagcCCgCCCCGgCCGCGCc- -3' miRNA: 3'- gUGC-GGGCGC----GG-GGGGUgGGCGCGag -5' |
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29479 | 3' | -68 | NC_006151.1 | + | 123086 | 0.66 | 0.384207 |
Target: 5'- gGCGCCUGUacgcggaccGCCUCUCG-CgGCGCUCg -3' miRNA: 3'- gUGCGGGCG---------CGGGGGGUgGgCGCGAG- -5' |
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29479 | 3' | -68 | NC_006151.1 | + | 22305 | 0.66 | 0.384207 |
Target: 5'- cCACGUCCGCGCCgagcgucguCCgggcgaccagcgCCGCCaauaGCGCUg -3' miRNA: 3'- -GUGCGGGCGCGG---------GG------------GGUGGg---CGCGAg -5' |
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29479 | 3' | -68 | NC_006151.1 | + | 38918 | 0.66 | 0.383435 |
Target: 5'- cCGCGCCuCGUGgaccaggaggucuUCCCCgaacucuggCGCCCGgCGCUCa -3' miRNA: 3'- -GUGCGG-GCGC-------------GGGGG---------GUGGGC-GCGAG- -5' |
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29479 | 3' | -68 | NC_006151.1 | + | 99532 | 0.66 | 0.381894 |
Target: 5'- gGCG-CCGCGCCCgCCCACggagcacgugggcgCgGCGCg- -3' miRNA: 3'- gUGCgGGCGCGGG-GGGUG--------------GgCGCGag -5' |
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29479 | 3' | -68 | NC_006151.1 | + | 67040 | 0.66 | 0.376532 |
Target: 5'- cCACGCCgagCGCGCCaccgCCUACCUGCugGCg- -3' miRNA: 3'- -GUGCGG---GCGCGGg---GGGUGGGCG--CGag -5' |
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29479 | 3' | -68 | NC_006151.1 | + | 77519 | 0.66 | 0.376532 |
Target: 5'- --aGCUgGCGCgCCUCGgCCGCGCg- -3' miRNA: 3'- gugCGGgCGCGgGGGGUgGGCGCGag -5' |
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29479 | 3' | -68 | NC_006151.1 | + | 82530 | 0.66 | 0.376532 |
Target: 5'- uGCGCgUgucguugaGCGCCCCCaGCCCGCcgaGCUg -3' miRNA: 3'- gUGCGgG--------CGCGGGGGgUGGGCG---CGAg -5' |
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29479 | 3' | -68 | NC_006151.1 | + | 113798 | 0.66 | 0.376532 |
Target: 5'- aCACGCgCUGCugcgGCgCCaCgGCCuCGCGCUCg -3' miRNA: 3'- -GUGCG-GGCG----CGgGG-GgUGG-GCGCGAG- -5' |
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29479 | 3' | -68 | NC_006151.1 | + | 15269 | 0.66 | 0.376532 |
Target: 5'- -uCGCCCGagcagaGCgCCCCGCUgcgcagCGCGCUg -3' miRNA: 3'- guGCGGGCg-----CGgGGGGUGG------GCGCGAg -5' |
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29479 | 3' | -68 | NC_006151.1 | + | 33937 | 0.66 | 0.376532 |
Target: 5'- gAgGCCCGCGCgCCCCGg--GgGCUCg -3' miRNA: 3'- gUgCGGGCGCGgGGGGUgggCgCGAG- -5' |
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29479 | 3' | -68 | NC_006151.1 | + | 54947 | 0.66 | 0.376532 |
Target: 5'- aCGCGCUgcgcgagcaCGCGCgCCUCugCCaGCuGCUCa -3' miRNA: 3'- -GUGCGG---------GCGCGgGGGGugGG-CG-CGAG- -5' |
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29479 | 3' | -68 | NC_006151.1 | + | 73122 | 0.66 | 0.376532 |
Target: 5'- gCGCGCCCGCGCgggUUgCACgCGCGC-Cg -3' miRNA: 3'- -GUGCGGGCGCGg--GGgGUGgGCGCGaG- -5' |
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29479 | 3' | -68 | NC_006151.1 | + | 83237 | 0.66 | 0.376532 |
Target: 5'- aGCGCggCGCGCgCCCCCAgUCGuCGCg- -3' miRNA: 3'- gUGCGg-GCGCG-GGGGGUgGGC-GCGag -5' |
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29479 | 3' | -68 | NC_006151.1 | + | 84443 | 0.66 | 0.376532 |
Target: 5'- gCGCgGCCCaUGuCCCCCCGCgccauggaCCGCGCg- -3' miRNA: 3'- -GUG-CGGGcGC-GGGGGGUG--------GGCGCGag -5' |
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29479 | 3' | -68 | NC_006151.1 | + | 100497 | 0.66 | 0.376532 |
Target: 5'- gGCGCCCGUGUUCCggacgcugugcgCCgACCaCGCGCg- -3' miRNA: 3'- gUGCGGGCGCGGGG------------GG-UGG-GCGCGag -5' |
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29479 | 3' | -68 | NC_006151.1 | + | 33708 | 0.66 | 0.376532 |
Target: 5'- gCACGCUcucucuCGCacaCCCCCCAcaucacacucucCCCGCGCa- -3' miRNA: 3'- -GUGCGG------GCGc--GGGGGGU------------GGGCGCGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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