miRNA display CGI


Results 21 - 40 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29479 3' -68 NC_006151.1 + 11288 0.75 0.097535
Target:  5'- -cCGUCCcCGUCCCCCGCCCGCuCUCc -3'
miRNA:   3'- guGCGGGcGCGGGGGGUGGGCGcGAG- -5'
29479 3' -68 NC_006151.1 + 11352 0.69 0.245399
Target:  5'- -cCGCCCGCGggCgCUACCgCGCGCUCc -3'
miRNA:   3'- guGCGGGCGCggGgGGUGG-GCGCGAG- -5'
29479 3' -68 NC_006151.1 + 11435 0.69 0.245399
Target:  5'- -cCGCCCaCGCaacucCUCCCGCCCGCGUg- -3'
miRNA:   3'- guGCGGGcGCG-----GGGGGUGGGCGCGag -5'
29479 3' -68 NC_006151.1 + 11519 0.7 0.219165
Target:  5'- -cCGCCCGCGgCaCUCCggGCCCGCGUg- -3'
miRNA:   3'- guGCGGGCGCgG-GGGG--UGGGCGCGag -5'
29479 3' -68 NC_006151.1 + 11566 0.67 0.339735
Target:  5'- gGC-CCCGacacCCCCCCGCCCGCcgggggagGCUUc -3'
miRNA:   3'- gUGcGGGCgc--GGGGGGUGGGCG--------CGAG- -5'
29479 3' -68 NC_006151.1 + 11647 0.68 0.280259
Target:  5'- aGCGCgCaCGCCgaCCGCCCGCGUUUg -3'
miRNA:   3'- gUGCGgGcGCGGggGGUGGGCGCGAG- -5'
29479 3' -68 NC_006151.1 + 12008 0.73 0.115743
Target:  5'- gGCGCCCGuCGUcuCUCCCGCCgGCGCa- -3'
miRNA:   3'- gUGCGGGC-GCG--GGGGGUGGgCGCGag -5'
29479 3' -68 NC_006151.1 + 12801 0.69 0.239952
Target:  5'- gCGCGCCCGCuCCCUCCGcguccccucucCCCGcCGCc- -3'
miRNA:   3'- -GUGCGGGCGcGGGGGGU-----------GGGC-GCGag -5'
29479 3' -68 NC_006151.1 + 12900 0.69 0.234605
Target:  5'- -cCGCCC-CGCUCCCCGCCC-C-CUCu -3'
miRNA:   3'- guGCGGGcGCGGGGGGUGGGcGcGAG- -5'
29479 3' -68 NC_006151.1 + 13125 0.67 0.339735
Target:  5'- gCGCGCucCCGCGaCUUCCCgGCCCGCGaugCg -3'
miRNA:   3'- -GUGCG--GGCGC-GGGGGG-UGGGCGCga-G- -5'
29479 3' -68 NC_006151.1 + 13423 0.71 0.169813
Target:  5'- cCGgGCCCGCGUCCCCgggGCCCGCa--- -3'
miRNA:   3'- -GUgCGGGCGCGGGGGg--UGGGCGcgag -5'
29479 3' -68 NC_006151.1 + 13743 0.7 0.216183
Target:  5'- gACGCCCGUcccgcgggccggaccGCCCCCUuCCCGgGaCUUg -3'
miRNA:   3'- gUGCGGGCG---------------CGGGGGGuGGGCgC-GAG- -5'
29479 3' -68 NC_006151.1 + 13982 0.68 0.286437
Target:  5'- cCGgGCCCGCGUCCCCgggGCCCaCGUg- -3'
miRNA:   3'- -GUgCGGGCGCGGGGGg--UGGGcGCGag -5'
29479 3' -68 NC_006151.1 + 14745 0.68 0.292723
Target:  5'- cCACGCCCccaucGCacccCCUCCCACCC-CGUUCc -3'
miRNA:   3'- -GUGCGGG-----CGc---GGGGGGUGGGcGCGAG- -5'
29479 3' -68 NC_006151.1 + 14782 0.66 0.354135
Target:  5'- cCAC-CCCGcCGaCCCCCCGCUCGacCGCcCg -3'
miRNA:   3'- -GUGcGGGC-GC-GGGGGGUGGGC--GCGaG- -5'
29479 3' -68 NC_006151.1 + 14869 0.69 0.224213
Target:  5'- --aGCCCGUGCCCUCCcCgCCGUuCUCg -3'
miRNA:   3'- gugCGGGCGCGGGGGGuG-GGCGcGAG- -5'
29479 3' -68 NC_006151.1 + 14920 0.68 0.292723
Target:  5'- cCACGaCCCcggucccggggaGCaGCCCCCCGuccCCCGC-CUCg -3'
miRNA:   3'- -GUGC-GGG------------CG-CGGGGGGU---GGGCGcGAG- -5'
29479 3' -68 NC_006151.1 + 15167 0.66 0.354135
Target:  5'- gGCGacaCGCGCgCCCUGCgCCGCGCc- -3'
miRNA:   3'- gUGCgg-GCGCGgGGGGUG-GGCGCGag -5'
29479 3' -68 NC_006151.1 + 15221 0.7 0.204601
Target:  5'- aCGCGCCaGCGCCCCUCGgcCCCcUGCUg -3'
miRNA:   3'- -GUGCGGgCGCGGGGGGU--GGGcGCGAg -5'
29479 3' -68 NC_006151.1 + 15269 0.66 0.376532
Target:  5'- -uCGCCCGagcagaGCgCCCCGCUgcgcagCGCGCUg -3'
miRNA:   3'- guGCGGGCg-----CGgGGGGUGG------GCGCGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.