miRNA display CGI


Results 21 - 40 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29479 3' -68 NC_006151.1 + 133181 0.66 0.346882
Target:  5'- --gGCCaCGCGUCCCaCGgCCGCGCa- -3'
miRNA:   3'- gugCGG-GCGCGGGGgGUgGGCGCGag -5'
29479 3' -68 NC_006151.1 + 132865 0.68 0.262359
Target:  5'- cCGgGgCCGCGCCCCCCAgCaggGC-CUCg -3'
miRNA:   3'- -GUgCgGGCGCGGGGGGUgGg--CGcGAG- -5'
29479 3' -68 NC_006151.1 + 132817 0.67 0.299116
Target:  5'- gCGCGUCCGgGCUggCCGCCCGCGg-- -3'
miRNA:   3'- -GUGCGGGCgCGGggGGUGGGCGCgag -5'
29479 3' -68 NC_006151.1 + 132624 0.68 0.26822
Target:  5'- gACGCUCGCGUCCgCCGUCgGCGCcCg -3'
miRNA:   3'- gUGCGGGCGCGGGgGGUGGgCGCGaG- -5'
29479 3' -68 NC_006151.1 + 132398 0.68 0.256602
Target:  5'- aGCGCCCGCGCaCCagCugCCGgaGCUUg -3'
miRNA:   3'- gUGCGGGCGCG-GGggGugGGCg-CGAG- -5'
29479 3' -68 NC_006151.1 + 131338 0.72 0.150847
Target:  5'- uCACcCCCGCGCcggCCCCCGCUCGUcCUCu -3'
miRNA:   3'- -GUGcGGGCGCG---GGGGGUGGGCGcGAG- -5'
29479 3' -68 NC_006151.1 + 130316 0.68 0.292723
Target:  5'- aGCGCgCGCGCCgCgCGCUCGgggaGCUCg -3'
miRNA:   3'- gUGCGgGCGCGGgGgGUGGGCg---CGAG- -5'
29479 3' -68 NC_006151.1 + 130094 0.68 0.26822
Target:  5'- aGCaGCUCGCGCUCCUCggccgugaaGCCCGgGUUCu -3'
miRNA:   3'- gUG-CGGGCGCGGGGGG---------UGGGCgCGAG- -5'
29479 3' -68 NC_006151.1 + 129874 0.72 0.158191
Target:  5'- gGCGUCgCGCGCCgCCgCCACCucgguCGCGUUCa -3'
miRNA:   3'- gUGCGG-GCGCGG-GG-GGUGG-----GCGCGAG- -5'
29479 3' -68 NC_006151.1 + 128813 0.68 0.256602
Target:  5'- gGCGCgCGUgGCCCCgUACgCgGCGCUCu -3'
miRNA:   3'- gUGCGgGCG-CGGGGgGUG-GgCGCGAG- -5'
29479 3' -68 NC_006151.1 + 128607 0.68 0.256602
Target:  5'- gCGCGCCacccgcggcgUGCGCCCCagguggcggaCCACgCGCGCgUCg -3'
miRNA:   3'- -GUGCGG----------GCGCGGGG----------GGUGgGCGCG-AG- -5'
29479 3' -68 NC_006151.1 + 128524 0.68 0.284573
Target:  5'- -uCGCCCGaGCCCgaggccacggcgggCCCGCCgGCGCg- -3'
miRNA:   3'- guGCGGGCgCGGG--------------GGGUGGgCGCGag -5'
29479 3' -68 NC_006151.1 + 127872 0.7 0.20936
Target:  5'- -cCGCCCGcCGCCgUCCACCUccaGCUCg -3'
miRNA:   3'- guGCGGGC-GCGGgGGGUGGGcg-CGAG- -5'
29479 3' -68 NC_006151.1 + 126471 0.69 0.245399
Target:  5'- gACGCCCuGUaGCCCCCU-CCCGCGg-- -3'
miRNA:   3'- gUGCGGG-CG-CGGGGGGuGGGCGCgag -5'
29479 3' -68 NC_006151.1 + 126388 0.66 0.391985
Target:  5'- gCGgGCCCGCGCUgCuggCCAgCCGCGUc- -3'
miRNA:   3'- -GUgCGGGCGCGGgG---GGUgGGCGCGag -5'
29479 3' -68 NC_006151.1 + 126204 0.7 0.189557
Target:  5'- uCGCGCCUGCGCCgcaaCCCCAugaaggcccuguacCCCGUcacgacgaagacGCUCa -3'
miRNA:   3'- -GUGCGGGCGCGG----GGGGU--------------GGGCG------------CGAG- -5'
29479 3' -68 NC_006151.1 + 125449 0.69 0.245399
Target:  5'- uCGCGCCUgaaccccaGCGCCgUggCCACggCCGCGCUCg -3'
miRNA:   3'- -GUGCGGG--------CGCGGgG--GGUG--GGCGCGAG- -5'
29479 3' -68 NC_006151.1 + 125209 0.73 0.13512
Target:  5'- gGC-CCCGCGgCCCCCgcggccgcccgucggGCCCGgCGCUCc -3'
miRNA:   3'- gUGcGGGCGCgGGGGG---------------UGGGC-GCGAG- -5'
29479 3' -68 NC_006151.1 + 125105 0.69 0.22626
Target:  5'- -uCGCCCGCgggggcuucguggugGCCUUCCGCCCGCugauCUCg -3'
miRNA:   3'- guGCGGGCG---------------CGGGGGGUGGGCGc---GAG- -5'
29479 3' -68 NC_006151.1 + 124468 0.72 0.140411
Target:  5'- --gGaCCUGCGCCCCUCGCgccugaaCGCGCUCg -3'
miRNA:   3'- gugC-GGGCGCGGGGGGUGg------GCGCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.