miRNA display CGI


Results 1 - 20 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29479 3' -68 NC_006151.1 + 140297 0.68 0.280259
Target:  5'- uGCGCCgGCGCCgCCUgcgggACgUGCGCUg -3'
miRNA:   3'- gUGCGGgCGCGGgGGG-----UGgGCGCGAg -5'
29479 3' -68 NC_006151.1 + 139587 0.7 0.199936
Target:  5'- uGgGCUCGCGCCCCCCcgagcggcgGCCCguccggGCGCg- -3'
miRNA:   3'- gUgCGGGCGCGGGGGG---------UGGG------CGCGag -5'
29479 3' -68 NC_006151.1 + 139456 0.73 0.118302
Target:  5'- gGCGcCCCGcCGCCCgCCACCUGCacaccgcggccccGCUCg -3'
miRNA:   3'- gUGC-GGGC-GCGGGgGGUGGGCG-------------CGAG- -5'
29479 3' -68 NC_006151.1 + 139262 0.71 0.161983
Target:  5'- cCACGCCCGCGCgCUCCgacggcggacGCgCCGCcCUCg -3'
miRNA:   3'- -GUGCGGGCGCGgGGGG----------UG-GGCGcGAG- -5'
29479 3' -68 NC_006151.1 + 139131 0.74 0.101691
Target:  5'- gCGCGCCCcguGCGCCCUCgucuucccgcuguaCGCCCGCGCccUCg -3'
miRNA:   3'- -GUGCGGG---CGCGGGGG--------------GUGGGCGCG--AG- -5'
29479 3' -68 NC_006151.1 + 139028 0.66 0.354135
Target:  5'- uCACGCUgGCacaccGCCaUCCCACgcugaUCGCGCUCa -3'
miRNA:   3'- -GUGCGGgCG-----CGG-GGGGUG-----GGCGCGAG- -5'
29479 3' -68 NC_006151.1 + 138977 0.69 0.234605
Target:  5'- --aGCUCGCGaCgCgCCGCgCCGCGCUCa -3'
miRNA:   3'- gugCGGGCGC-GgGgGGUG-GGCGCGAG- -5'
29479 3' -68 NC_006151.1 + 138576 0.68 0.261778
Target:  5'- -uCGCCCGCcUgCCCCACCCcgucguguacgcgGCGCUg -3'
miRNA:   3'- guGCGGGCGcGgGGGGUGGG-------------CGCGAg -5'
29479 3' -68 NC_006151.1 + 138341 0.68 0.262359
Target:  5'- gCACGCgCGCaGCCCgCCgGCCCGCa--- -3'
miRNA:   3'- -GUGCGgGCG-CGGG-GGgUGGGCGcgag -5'
29479 3' -68 NC_006151.1 + 137932 0.7 0.212748
Target:  5'- gGCGCCUGCuccccuuuggggacGCgCCCCCgggcuucgacgACCCGCGCa- -3'
miRNA:   3'- gUGCGGGCG--------------CG-GGGGG-----------UGGGCGCGag -5'
29479 3' -68 NC_006151.1 + 137645 0.74 0.104981
Target:  5'- -uCGUCCGCGCCCCCguCCCgGCGgaCg -3'
miRNA:   3'- guGCGGGCGCGGGGGguGGG-CGCgaG- -5'
29479 3' -68 NC_006151.1 + 137259 0.67 0.312224
Target:  5'- -uCGCCuCGCGCgCCCgguGCCCGCgggcacGCUCg -3'
miRNA:   3'- guGCGG-GCGCGgGGGg--UGGGCG------CGAG- -5'
29479 3' -68 NC_006151.1 + 136886 0.7 0.199936
Target:  5'- aGCGCCuCGCGCCCCaCgGCUgggUGCGCg- -3'
miRNA:   3'- gUGCGG-GCGCGGGG-GgUGG---GCGCGag -5'
29479 3' -68 NC_006151.1 + 136844 0.66 0.391985
Target:  5'- aCGCGgCCGCcgGCCUCgCGCgCCGCGUg- -3'
miRNA:   3'- -GUGCgGGCG--CGGGGgGUG-GGCGCGag -5'
29479 3' -68 NC_006151.1 + 136808 0.69 0.250949
Target:  5'- cCGCGCUCGCGgCCgaCGCgCCGCGCg- -3'
miRNA:   3'- -GUGCGGGCGCgGGggGUG-GGCGCGag -5'
29479 3' -68 NC_006151.1 + 136246 0.71 0.177979
Target:  5'- gCugGCCaCGCGCCUccaccucuUCCACCCGCGg-- -3'
miRNA:   3'- -GugCGG-GCGCGGG--------GGGUGGGCGCgag -5'
29479 3' -68 NC_006151.1 + 136086 0.68 0.280259
Target:  5'- aGCGCCCGCuGCgCUCCAU-CGCGgUCg -3'
miRNA:   3'- gUGCGGGCG-CGgGGGGUGgGCGCgAG- -5'
29479 3' -68 NC_006151.1 + 134807 0.67 0.312224
Target:  5'- gGCgGCCCGCGCCggaCCCggacgguggcgACCgCGCGCg- -3'
miRNA:   3'- gUG-CGGGCGCGGg--GGG-----------UGG-GCGCGag -5'
29479 3' -68 NC_006151.1 + 134692 0.7 0.190883
Target:  5'- cCAC-CCCGCGCgCCCCGaugcagcaccgcCCCGCGUg- -3'
miRNA:   3'- -GUGcGGGCGCGgGGGGU------------GGGCGCGag -5'
29479 3' -68 NC_006151.1 + 134391 0.67 0.312224
Target:  5'- gACGCCgGauaCGacauCCCCUGCCCGCGCg- -3'
miRNA:   3'- gUGCGGgC---GCg---GGGGGUGGGCGCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.