miRNA display CGI


Results 41 - 60 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29479 3' -68 NC_006151.1 + 15328 0.67 0.31894
Target:  5'- cUACGaCCCGCGCguccucUCCCCGCCgGUcaucgagggcccGCUCu -3'
miRNA:   3'- -GUGC-GGGCGCG------GGGGGUGGgCG------------CGAG- -5'
29479 3' -68 NC_006151.1 + 15911 0.75 0.098498
Target:  5'- aCGCgGCCCGcCGCCgCCCCGugaggcgggccucgcCCCGCGCUg -3'
miRNA:   3'- -GUG-CGGGC-GCGG-GGGGU---------------GGGCGCGAg -5'
29479 3' -68 NC_006151.1 + 16887 0.71 0.161983
Target:  5'- gCGCGCUCGCGUCCguugccgcgCCCGCCCcgGCGC-Cg -3'
miRNA:   3'- -GUGCGGGCGCGGG---------GGGUGGG--CGCGaG- -5'
29479 3' -68 NC_006151.1 + 17789 0.7 0.219165
Target:  5'- -cCGCCCGCuucGCCCCCCcggACCCccccuccuggGCGCg- -3'
miRNA:   3'- guGCGGGCG---CGGGGGG---UGGG----------CGCGag -5'
29479 3' -68 NC_006151.1 + 17960 0.68 0.262359
Target:  5'- gGCGCCCGCcuGCCggcgUCCCACgCgGCGCa- -3'
miRNA:   3'- gUGCGGGCG--CGG----GGGGUG-GgCGCGag -5'
29479 3' -68 NC_006151.1 + 18522 0.68 0.286437
Target:  5'- --aGCauGCGCgUCCCCGCCCGCGUc- -3'
miRNA:   3'- gugCGggCGCG-GGGGGUGGGCGCGag -5'
29479 3' -68 NC_006151.1 + 18994 0.69 0.250949
Target:  5'- gUACGCgCgGCGCgCCaCCAgCCGCGCg- -3'
miRNA:   3'- -GUGCG-GgCGCGgGG-GGUgGGCGCGag -5'
29479 3' -68 NC_006151.1 + 20747 0.67 0.325764
Target:  5'- aGCaGCCgGCGCgCCUCCACCgcggcggaCGCGCg- -3'
miRNA:   3'- gUG-CGGgCGCG-GGGGGUGG--------GCGCGag -5'
29479 3' -68 NC_006151.1 + 21027 0.7 0.190883
Target:  5'- gACGCCgGCGCCCCUgaagaggaCGCCCccgacGCGCg- -3'
miRNA:   3'- gUGCGGgCGCGGGGG--------GUGGG-----CGCGag -5'
29479 3' -68 NC_006151.1 + 21262 0.67 0.331998
Target:  5'- aCACGCCCaccaggaGCGCgCCCaucgcgguGCCCGUGC-Cg -3'
miRNA:   3'- -GUGCGGG-------CGCGgGGGg-------UGGGCGCGaG- -5'
29479 3' -68 NC_006151.1 + 22305 0.66 0.384207
Target:  5'- cCACGUCCGCGCCgagcgucguCCgggcgaccagcgCCGCCaauaGCGCUg -3'
miRNA:   3'- -GUGCGGGCGCGG---------GG------------GGUGGg---CGCGAg -5'
29479 3' -68 NC_006151.1 + 23123 0.69 0.224213
Target:  5'- gGC-CCCGCGCCCCUCcUCCGuCGC-Cg -3'
miRNA:   3'- gUGcGGGCGCGGGGGGuGGGC-GCGaG- -5'
29479 3' -68 NC_006151.1 + 25431 0.66 0.368961
Target:  5'- gCGCGCCCGUcaUCCCUC-CCCGCGg-- -3'
miRNA:   3'- -GUGCGGGCGc-GGGGGGuGGGCGCgag -5'
29479 3' -68 NC_006151.1 + 25456 0.7 0.195364
Target:  5'- -cCGCCCGC-CCCCCC-CUgGCGC-Ca -3'
miRNA:   3'- guGCGGGCGcGGGGGGuGGgCGCGaG- -5'
29479 3' -68 NC_006151.1 + 26372 0.67 0.335499
Target:  5'- gGgGCgCGCGUCCCCCGgcgggcggcguccuuCCCGCcCUCc -3'
miRNA:   3'- gUgCGgGCGCGGGGGGU---------------GGGCGcGAG- -5'
29479 3' -68 NC_006151.1 + 27210 0.7 0.219165
Target:  5'- gGCGCCgGgGCCCCgCGCgCCGUGgaCg -3'
miRNA:   3'- gUGCGGgCgCGGGGgGUG-GGCGCgaG- -5'
29479 3' -68 NC_006151.1 + 28289 0.67 0.312224
Target:  5'- gCGgGCCCG-GCUCCCCcauugGCCgGCGCg- -3'
miRNA:   3'- -GUgCGGGCgCGGGGGG-----UGGgCGCGag -5'
29479 3' -68 NC_006151.1 + 28562 0.67 0.332696
Target:  5'- -gUGCCCGCGUCCCgggaGCCCGCa--- -3'
miRNA:   3'- guGCGGGCGCGGGGgg--UGGGCGcgag -5'
29479 3' -68 NC_006151.1 + 28849 0.67 0.312224
Target:  5'- gCGgGCCCG-GCUCCCCcauugGCCgGCGCg- -3'
miRNA:   3'- -GUgCGGGCgCGGGGGG-----UGGgCGCGag -5'
29479 3' -68 NC_006151.1 + 29908 0.7 0.199936
Target:  5'- -cCGCUCGCGCUCCCCGCCC---CUCc -3'
miRNA:   3'- guGCGGGCGCGGGGGGUGGGcgcGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.