miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2948 5' -52.3 NC_001493.1 + 30278 0.66 0.972751
Target:  5'- aGAGGACCauUUCcgGGCUCgagccaUCGUGgGCGAc -3'
miRNA:   3'- -CUUUUGG--AAGa-CCGAG------AGCGCgUGCU- -5'
2948 5' -52.3 NC_001493.1 + 120174 0.66 0.969801
Target:  5'- uGGAAACCgagCUcgacgaucGGCUCUCcCGCAcCGAa -3'
miRNA:   3'- -CUUUUGGaa-GA--------CCGAGAGcGCGU-GCU- -5'
2948 5' -52.3 NC_001493.1 + 4620 0.66 0.969801
Target:  5'- uGGAAACCgagCUcgacgaucGGCUCUCcCGCAcCGAa -3'
miRNA:   3'- -CUUUUGGaa-GA--------CCGAGAGcGCGU-GCU- -5'
2948 5' -52.3 NC_001493.1 + 124028 0.66 0.963232
Target:  5'- --cGACaggaCUGGCUCUgaagagaGCGCGCGAg -3'
miRNA:   3'- cuuUUGgaa-GACCGAGAg------CGCGUGCU- -5'
2948 5' -52.3 NC_001493.1 + 8474 0.66 0.963232
Target:  5'- --cGACaggaCUGGCUCUgaagagaGCGCGCGAg -3'
miRNA:   3'- cuuUUGgaa-GACCGAGAg------CGCGUGCU- -5'
2948 5' -52.3 NC_001493.1 + 110760 0.67 0.955727
Target:  5'- uGGAAACCgUCuUGGUagaUCGCGUGCGGg -3'
miRNA:   3'- -CUUUUGGaAG-ACCGag-AGCGCGUGCU- -5'
2948 5' -52.3 NC_001493.1 + 17000 0.67 0.955727
Target:  5'- cGAGGCg-UCUGGggaCUCUCGgGCAUGAu -3'
miRNA:   3'- cUUUUGgaAGACC---GAGAGCgCGUGCU- -5'
2948 5' -52.3 NC_001493.1 + 132554 0.67 0.955727
Target:  5'- cGAGGCg-UCUGGggaCUCUCGgGCAUGAu -3'
miRNA:   3'- cUUUUGgaAGACC---GAGAGCgCGUGCU- -5'
2948 5' -52.3 NC_001493.1 + 130143 0.67 0.951609
Target:  5'- -cGGACCUcacGGUcCUCGCGCACGu -3'
miRNA:   3'- cuUUUGGAagaCCGaGAGCGCGUGCu -5'
2948 5' -52.3 NC_001493.1 + 14588 0.67 0.951609
Target:  5'- -cGGACCUcacGGUcCUCGCGCACGu -3'
miRNA:   3'- cuUUUGGAagaCCGaGAGCGCGUGCu -5'
2948 5' -52.3 NC_001493.1 + 53252 0.68 0.915675
Target:  5'- --uGACUUUUUGGCUCUCGUGgcCACc- -3'
miRNA:   3'- cuuUUGGAAGACCGAGAGCGC--GUGcu -5'
2948 5' -52.3 NC_001493.1 + 19115 0.69 0.882334
Target:  5'- -cGGGCCUUcCUGGaCUaucugaccaUCGCGCGCGGg -3'
miRNA:   3'- cuUUUGGAA-GACC-GAg--------AGCGCGUGCU- -5'
2948 5' -52.3 NC_001493.1 + 106648 0.7 0.867286
Target:  5'- uGAAuAUgUUCUGGCUCUugauaucccUGUGCAUGAg -3'
miRNA:   3'- -CUUuUGgAAGACCGAGA---------GCGCGUGCU- -5'
2948 5' -52.3 NC_001493.1 + 28456 0.7 0.843016
Target:  5'- cGAGGCCUUCUGcaugcgcgugaGUUCaUCGCGCAgGAc -3'
miRNA:   3'- cUUUUGGAAGAC-----------CGAG-AGCGCGUgCU- -5'
2948 5' -52.3 NC_001493.1 + 69707 1.1 0.004757
Target:  5'- aGAAAACCUUCUGGCUCUCGCGCACGAg -3'
miRNA:   3'- -CUUUUGGAAGACCGAGAGCGCGUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.