miRNA display CGI


Results 41 - 60 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29480 3' -51.1 NC_006151.1 + 135101 0.66 0.988622
Target:  5'- gGCCGGGc-GGGcgGCGgUAGCgCGCGGg -3'
miRNA:   3'- -CGGCUUuuUCCuaUGUgGUCG-GCGCU- -5'
29480 3' -51.1 NC_006151.1 + 141249 0.66 0.988622
Target:  5'- -aCGGAGggcGAGGAgau-CCAGUCGCGGg -3'
miRNA:   3'- cgGCUUU---UUCCUauguGGUCGGCGCU- -5'
29480 3' -51.1 NC_006151.1 + 63574 0.66 0.988622
Target:  5'- uGCCGAAAGuuGGcgugGCGCgGGuUCGCGAa -3'
miRNA:   3'- -CGGCUUUUu-CCua--UGUGgUC-GGCGCU- -5'
29480 3' -51.1 NC_006151.1 + 41586 0.66 0.988023
Target:  5'- cGCCGAugcgauccgcGGAgcccGCcCCGGCCGCGc -3'
miRNA:   3'- -CGGCUuuuu------CCUa---UGuGGUCGGCGCu -5'
29480 3' -51.1 NC_006151.1 + 135310 0.66 0.987714
Target:  5'- cGCCGAccGAGAGG-UACaggugcaugagcgccGCCAGgcacguguCCGCGAg -3'
miRNA:   3'- -CGGCU--UUUUCCuAUG---------------UGGUC--------GGCGCU- -5'
29480 3' -51.1 NC_006151.1 + 47562 0.66 0.987079
Target:  5'- cGCgCGAuacugcAGuuUACugCAGCCGCGGu -3'
miRNA:   3'- -CG-GCUuuu---UCcuAUGugGUCGGCGCU- -5'
29480 3' -51.1 NC_006151.1 + 48585 0.66 0.987079
Target:  5'- uGCCGccc-GGGGUGCGCCucGUCGUGc -3'
miRNA:   3'- -CGGCuuuuUCCUAUGUGGu-CGGCGCu -5'
29480 3' -51.1 NC_006151.1 + 59530 0.66 0.987079
Target:  5'- cGCCGcguGAGG--GC-CCAGCgCGCGGg -3'
miRNA:   3'- -CGGCuuuUUCCuaUGuGGUCG-GCGCU- -5'
29480 3' -51.1 NC_006151.1 + 59848 0.66 0.987079
Target:  5'- gGCCGGuccGGGGGGcGCAgCuGCCGCa- -3'
miRNA:   3'- -CGGCUu--UUUCCUaUGUgGuCGGCGcu -5'
29480 3' -51.1 NC_006151.1 + 120539 0.66 0.987079
Target:  5'- uGCUGAccAAGGAcgACAUCgagaccaucgcGGCCGUGAa -3'
miRNA:   3'- -CGGCUuuUUCCUa-UGUGG-----------UCGGCGCU- -5'
29480 3' -51.1 NC_006151.1 + 5734 0.67 0.98538
Target:  5'- cGCCGggGuccGAGGccgcgcCGCCGGCC-CGGg -3'
miRNA:   3'- -CGGCuuU---UUCCuau---GUGGUCGGcGCU- -5'
29480 3' -51.1 NC_006151.1 + 89975 0.67 0.98538
Target:  5'- gGCUGgcGAcguAGG-UGCACguGCCGCGc -3'
miRNA:   3'- -CGGCuuUU---UCCuAUGUGguCGGCGCu -5'
29480 3' -51.1 NC_006151.1 + 7758 0.67 0.98538
Target:  5'- cGCCGggGcGGGAga-ACCGGaCC-CGAa -3'
miRNA:   3'- -CGGCuuUuUCCUaugUGGUC-GGcGCU- -5'
29480 3' -51.1 NC_006151.1 + 76176 0.67 0.98538
Target:  5'- cGCgCGAGcugcuGGAUgGCGCgCAGCCGCa- -3'
miRNA:   3'- -CG-GCUUuuu--CCUA-UGUG-GUCGGCGcu -5'
29480 3' -51.1 NC_006151.1 + 119200 0.67 0.98538
Target:  5'- cGCCGAcgcgcgcAAGGAggGCGCCGGCCc--- -3'
miRNA:   3'- -CGGCUuu-----UUCCUa-UGUGGUCGGcgcu -5'
29480 3' -51.1 NC_006151.1 + 131898 0.67 0.98538
Target:  5'- gGCCGAGGGcgacGGGGgcgGCAgCAGggccuCCGCGGu -3'
miRNA:   3'- -CGGCUUUU----UCCUa--UGUgGUC-----GGCGCU- -5'
29480 3' -51.1 NC_006151.1 + 36661 0.67 0.984282
Target:  5'- cGCCG-GAGGGGAccgcggucgucaccaU-CACCAGCacCGCGAg -3'
miRNA:   3'- -CGGCuUUUUCCU---------------AuGUGGUCG--GCGCU- -5'
29480 3' -51.1 NC_006151.1 + 10440 0.67 0.984282
Target:  5'- gGCCGGcggggagggaggaggAGGAGGAcGCGgCGGCgGUGAa -3'
miRNA:   3'- -CGGCU---------------UUUUCCUaUGUgGUCGgCGCU- -5'
29480 3' -51.1 NC_006151.1 + 137408 0.67 0.983516
Target:  5'- cGCCGG--GGGGcgcccuCGCCGccGCCGCGGg -3'
miRNA:   3'- -CGGCUuuUUCCuau---GUGGU--CGGCGCU- -5'
29480 3' -51.1 NC_006151.1 + 17241 0.67 0.983516
Target:  5'- cGuuGAugacGGAGGAccACuccguguCCAGCCGCGGg -3'
miRNA:   3'- -CggCUu---UUUCCUa-UGu------GGUCGGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.