miRNA display CGI


Results 21 - 40 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29480 3' -51.1 NC_006151.1 + 38138 0.66 0.990017
Target:  5'- gGCCGAGc--GGcgGCA--GGCCGCGGa -3'
miRNA:   3'- -CGGCUUuuuCCuaUGUggUCGGCGCU- -5'
29480 3' -51.1 NC_006151.1 + 3967 0.66 0.990017
Target:  5'- gGCCGcgc--GGcgGCcucggcgaGCCGGCCGCGGc -3'
miRNA:   3'- -CGGCuuuuuCCuaUG--------UGGUCGGCGCU- -5'
29480 3' -51.1 NC_006151.1 + 24294 0.66 0.990017
Target:  5'- gGgCGGGAAcuccucGGGGUGCACCccgaGGgCGCGGa -3'
miRNA:   3'- -CgGCUUUU------UCCUAUGUGG----UCgGCGCU- -5'
29480 3' -51.1 NC_006151.1 + 105494 0.66 0.990017
Target:  5'- uGCCGucGAGGAGGAcgUGCGCgAGCU-CGAc -3'
miRNA:   3'- -CGGC--UUUUUCCU--AUGUGgUCGGcGCU- -5'
29480 3' -51.1 NC_006151.1 + 111749 0.66 0.990017
Target:  5'- gGUCGc-AGGGGAcguggGC-CCAGCUGCGAu -3'
miRNA:   3'- -CGGCuuUUUCCUa----UGuGGUCGGCGCU- -5'
29480 3' -51.1 NC_006151.1 + 92180 0.66 0.990017
Target:  5'- cGCCGAcggcGAcGGGGccgccgacGCGCC-GCCGCGGc -3'
miRNA:   3'- -CGGCU----UUuUCCUa-------UGUGGuCGGCGCU- -5'
29480 3' -51.1 NC_006151.1 + 91532 0.66 0.990017
Target:  5'- -aCGAGGAAGGcGUGCGCgaggugcgCGGCCaGCGGg -3'
miRNA:   3'- cgGCUUUUUCC-UAUGUG--------GUCGG-CGCU- -5'
29480 3' -51.1 NC_006151.1 + 73246 0.66 0.990017
Target:  5'- gGCCGAAGAcGGGcacggGCGCCAGgCGg-- -3'
miRNA:   3'- -CGGCUUUUuCCUa----UGUGGUCgGCgcu -5'
29480 3' -51.1 NC_006151.1 + 46948 0.66 0.990017
Target:  5'- cGCCGcgGAcuGGGGcgacccuguugcUGCugCGGCCGCc- -3'
miRNA:   3'- -CGGCuuUU--UCCU------------AUGugGUCGGCGcu -5'
29480 3' -51.1 NC_006151.1 + 135132 0.66 0.990017
Target:  5'- gGCUGGGcgGGGAcggGCAgacCCAGCCcgGCGGg -3'
miRNA:   3'- -CGGCUUuuUCCUa--UGU---GGUCGG--CGCU- -5'
29480 3' -51.1 NC_006151.1 + 9041 0.66 0.989197
Target:  5'- cGCCGggGcgccccgcgugcuccGGGG--GCGCCGGCCGg-- -3'
miRNA:   3'- -CGGCuuU---------------UUCCuaUGUGGUCGGCgcu -5'
29480 3' -51.1 NC_006151.1 + 87408 0.66 0.988622
Target:  5'- aGCCGGu--GGuGGUGCAggcCCAGCCgGUGGc -3'
miRNA:   3'- -CGGCUuuuUC-CUAUGU---GGUCGG-CGCU- -5'
29480 3' -51.1 NC_006151.1 + 102226 0.66 0.988622
Target:  5'- -aCGggGAGGcGccGUGCGCCGucGCCGCGc -3'
miRNA:   3'- cgGCuuUUUC-C--UAUGUGGU--CGGCGCu -5'
29480 3' -51.1 NC_006151.1 + 102426 0.66 0.988622
Target:  5'- -gCGAAcGAGGccAUGCACCGGgCGCu- -3'
miRNA:   3'- cgGCUUuUUCC--UAUGUGGUCgGCGcu -5'
29480 3' -51.1 NC_006151.1 + 104840 0.66 0.988622
Target:  5'- cGCCGcggcGGAGGcgG-ACCAgGCCGCGGc -3'
miRNA:   3'- -CGGCuu--UUUCCuaUgUGGU-CGGCGCU- -5'
29480 3' -51.1 NC_006151.1 + 128465 0.66 0.988622
Target:  5'- cGCCGAGGAucuccAGGGcgucaaACACCGucGCCGUGu -3'
miRNA:   3'- -CGGCUUUU-----UCCUa-----UGUGGU--CGGCGCu -5'
29480 3' -51.1 NC_006151.1 + 135101 0.66 0.988622
Target:  5'- gGCCGGGc-GGGcgGCGgUAGCgCGCGGg -3'
miRNA:   3'- -CGGCUUuuUCCuaUGUgGUCG-GCGCU- -5'
29480 3' -51.1 NC_006151.1 + 141249 0.66 0.988622
Target:  5'- -aCGGAGggcGAGGAgau-CCAGUCGCGGg -3'
miRNA:   3'- cgGCUUU---UUCCUauguGGUCGGCGCU- -5'
29480 3' -51.1 NC_006151.1 + 63574 0.66 0.988622
Target:  5'- uGCCGAAAGuuGGcgugGCGCgGGuUCGCGAa -3'
miRNA:   3'- -CGGCUUUUu-CCua--UGUGgUC-GGCGCU- -5'
29480 3' -51.1 NC_006151.1 + 78110 0.66 0.988622
Target:  5'- gGCCGggGc-GGAcgccauccUGCgGCgGGCCGCGGg -3'
miRNA:   3'- -CGGCuuUuuCCU--------AUG-UGgUCGGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.