miRNA display CGI


Results 21 - 40 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29480 3' -51.1 NC_006151.1 + 8736 0.68 0.968368
Target:  5'- uCCGAGGAggGGGGUGC-CCGGgCGUGu -3'
miRNA:   3'- cGGCUUUU--UCCUAUGuGGUCgGCGCu -5'
29480 3' -51.1 NC_006151.1 + 9041 0.66 0.989197
Target:  5'- cGCCGggGcgccccgcgugcuccGGGG--GCGCCGGCCGg-- -3'
miRNA:   3'- -CGGCuuU---------------UUCCuaUGUGGUCGGCgcu -5'
29480 3' -51.1 NC_006151.1 + 9611 0.71 0.886731
Target:  5'- -aCGggGAAGGG---GCCGGCgGCGAg -3'
miRNA:   3'- cgGCuuUUUCCUaugUGGUCGgCGCU- -5'
29480 3' -51.1 NC_006151.1 + 9853 0.67 0.981478
Target:  5'- aCCGAGAGAGGAgaauaagaaGCAgaAGCCGgGGc -3'
miRNA:   3'- cGGCUUUUUCCUa--------UGUggUCGGCgCU- -5'
29480 3' -51.1 NC_006151.1 + 10440 0.67 0.984282
Target:  5'- gGCCGGcggggagggaggaggAGGAGGAcGCGgCGGCgGUGAa -3'
miRNA:   3'- -CGGCU---------------UUUUCCUaUGUgGUCGgCGCU- -5'
29480 3' -51.1 NC_006151.1 + 10888 0.68 0.965108
Target:  5'- uGCCGGAGAaaagGGGGU--GCCGG-CGCGGa -3'
miRNA:   3'- -CGGCUUUU----UCCUAugUGGUCgGCGCU- -5'
29480 3' -51.1 NC_006151.1 + 10935 0.66 0.988622
Target:  5'- cGCCGAGGGuGGGcGCGCguGuCCGUGu -3'
miRNA:   3'- -CGGCUUUUuCCUaUGUGguC-GGCGCu -5'
29480 3' -51.1 NC_006151.1 + 11538 0.68 0.971406
Target:  5'- cCCGcguGAGAGGGUACAgagcgaacCCGGCCcCGAc -3'
miRNA:   3'- cGGCu--UUUUCCUAUGU--------GGUCGGcGCU- -5'
29480 3' -51.1 NC_006151.1 + 11586 0.69 0.957122
Target:  5'- cGCCGggGGAGGcuucccggaACCAG-CGCGGc -3'
miRNA:   3'- -CGGCuuUUUCCuaug-----UGGUCgGCGCU- -5'
29480 3' -51.1 NC_006151.1 + 13672 0.68 0.961619
Target:  5'- cGCCucc-GGGGAcGCGCCGGCCaauGCGGg -3'
miRNA:   3'- -CGGcuuuUUCCUaUGUGGUCGG---CGCU- -5'
29480 3' -51.1 NC_006151.1 + 14053 0.67 0.981264
Target:  5'- gGgCGAuAAAGGGGUGCGuggcggcCCGGCCGaCGGc -3'
miRNA:   3'- -CgGCU-UUUUCCUAUGU-------GGUCGGC-GCU- -5'
29480 3' -51.1 NC_006151.1 + 14122 0.68 0.965108
Target:  5'- aCCGGGAGAGGcgcggagcGCGCCccgAGCCGaCGAg -3'
miRNA:   3'- cGGCUUUUUCCua------UGUGG---UCGGC-GCU- -5'
29480 3' -51.1 NC_006151.1 + 17241 0.67 0.983516
Target:  5'- cGuuGAugacGGAGGAccACuccguguCCAGCCGCGGg -3'
miRNA:   3'- -CggCUu---UUUCCUa-UGu------GGUCGGCGCU- -5'
29480 3' -51.1 NC_006151.1 + 17433 0.74 0.776321
Target:  5'- aGCCGggGgcgaucuccGAGGAgcgcaGCACCAcguguuGCCGCGGc -3'
miRNA:   3'- -CGGCuuU---------UUCCUa----UGUGGU------CGGCGCU- -5'
29480 3' -51.1 NC_006151.1 + 17671 0.66 0.992404
Target:  5'- aCCGAcGAGAGGA-ACAgCAGagaCGCGGa -3'
miRNA:   3'- cGGCU-UUUUCCUaUGUgGUCg--GCGCU- -5'
29480 3' -51.1 NC_006151.1 + 18418 0.75 0.726544
Target:  5'- cGCCGggGGAGGAgggcCGCCGGCgGgCGu -3'
miRNA:   3'- -CGGCuuUUUCCUau--GUGGUCGgC-GCu -5'
29480 3' -51.1 NC_006151.1 + 20780 0.68 0.968368
Target:  5'- cGCCGGGcGAGcGGcucgcgcuUGCGCagaCAGCCGCGGa -3'
miRNA:   3'- -CGGCUUuUUC-CU--------AUGUG---GUCGGCGCU- -5'
29480 3' -51.1 NC_006151.1 + 20987 0.68 0.974228
Target:  5'- cGCCGGGcacGAGGAcgGCGCU-GCCgGCGAc -3'
miRNA:   3'- -CGGCUUu--UUCCUa-UGUGGuCGG-CGCU- -5'
29480 3' -51.1 NC_006151.1 + 23412 0.68 0.965108
Target:  5'- cGCUGGu---GGu--CGCCGGCCGUGGg -3'
miRNA:   3'- -CGGCUuuuuCCuauGUGGUCGGCGCU- -5'
29480 3' -51.1 NC_006151.1 + 23815 0.72 0.83139
Target:  5'- cGUCGAGAGgcggauccAGGAgGCGCaucucgCAGCCGCGAg -3'
miRNA:   3'- -CGGCUUUU--------UCCUaUGUG------GUCGGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.