miRNA display CGI


Results 1 - 20 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29480 3' -51.1 NC_006151.1 + 1838 0.72 0.83139
Target:  5'- cGCCGGgccGAGGGGAccgAgGCCGccGCCGCGGa -3'
miRNA:   3'- -CGGCU---UUUUCCUa--UgUGGU--CGGCGCU- -5'
29480 3' -51.1 NC_006151.1 + 2915 0.67 0.976842
Target:  5'- aGCCGgcGccGcGccGCGCCgAGCCGCGAg -3'
miRNA:   3'- -CGGCuuUuuC-CuaUGUGG-UCGGCGCU- -5'
29480 3' -51.1 NC_006151.1 + 3102 0.67 0.979256
Target:  5'- cGCCGAGAGGccgccgcggcgcGGGUcccAgGCCGGgCGCGGg -3'
miRNA:   3'- -CGGCUUUUU------------CCUA---UgUGGUCgGCGCU- -5'
29480 3' -51.1 NC_006151.1 + 3297 0.69 0.945267
Target:  5'- gGCCGGGucGAAGGugaGCGCCGGgCGCc- -3'
miRNA:   3'- -CGGCUU--UUUCCua-UGUGGUCgGCGcu -5'
29480 3' -51.1 NC_006151.1 + 3406 0.68 0.974228
Target:  5'- gGCCGcggcguguGGGucuCGCCGGCCGgGAc -3'
miRNA:   3'- -CGGCuuuu----UCCuauGUGGUCGGCgCU- -5'
29480 3' -51.1 NC_006151.1 + 3561 0.66 0.992404
Target:  5'- cCCGAGuccGAGGGAgcgGCGCUugcGCCGgGGc -3'
miRNA:   3'- cGGCUU---UUUCCUa--UGUGGu--CGGCgCU- -5'
29480 3' -51.1 NC_006151.1 + 3854 0.74 0.766602
Target:  5'- aGCCGggGaggccgGAGGggGCGCCcGCCGCc- -3'
miRNA:   3'- -CGGCuuU------UUCCuaUGUGGuCGGCGcu -5'
29480 3' -51.1 NC_006151.1 + 3925 0.67 0.983516
Target:  5'- gGCCaGAGcgGGGGcAgGCCGGgCGCGGg -3'
miRNA:   3'- -CGG-CUUuuUCCUaUgUGGUCgGCGCU- -5'
29480 3' -51.1 NC_006151.1 + 3967 0.66 0.990017
Target:  5'- gGCCGcgc--GGcgGCcucggcgaGCCGGCCGCGGc -3'
miRNA:   3'- -CGGCuuuuuCCuaUG--------UGGUCGGCGCU- -5'
29480 3' -51.1 NC_006151.1 + 4588 0.68 0.965108
Target:  5'- uGCCGGugauGAAGGA---GCCguGGCCGUGGg -3'
miRNA:   3'- -CGGCUu---UUUCCUaugUGG--UCGGCGCU- -5'
29480 3' -51.1 NC_006151.1 + 4773 0.66 0.992404
Target:  5'- -aUGAAGAcGGGcACGggcCCGGCCGCGGc -3'
miRNA:   3'- cgGCUUUUuCCUaUGU---GGUCGGCGCU- -5'
29480 3' -51.1 NC_006151.1 + 5052 0.7 0.924907
Target:  5'- cGgCGGAGGAGGAggcggaggAgGCCgagGGCCGCGGg -3'
miRNA:   3'- -CgGCUUUUUCCUa-------UgUGG---UCGGCGCU- -5'
29480 3' -51.1 NC_006151.1 + 5614 0.7 0.935598
Target:  5'- uCCGGcgGAGGggGCGCCGccGCCGCc- -3'
miRNA:   3'- cGGCUuuUUCCuaUGUGGU--CGGCGcu -5'
29480 3' -51.1 NC_006151.1 + 5734 0.67 0.98538
Target:  5'- cGCCGggGuccGAGGccgcgcCGCCGGCC-CGGg -3'
miRNA:   3'- -CGGCuuU---UUCCuau---GUGGUCGGcGCU- -5'
29480 3' -51.1 NC_006151.1 + 5829 0.75 0.705951
Target:  5'- aGCCGGAGGAGGAg--GCCggggaGGCUGCGGa -3'
miRNA:   3'- -CGGCUUUUUCCUaugUGG-----UCGGCGCU- -5'
29480 3' -51.1 NC_006151.1 + 5914 0.66 0.991275
Target:  5'- uGCCGggGucGGcgGCcggggcccggaGCCGGCC-CGGg -3'
miRNA:   3'- -CGGCuuUuuCCuaUG-----------UGGUCGGcGCU- -5'
29480 3' -51.1 NC_006151.1 + 6108 0.82 0.351963
Target:  5'- gGCCGAAGGAGGAcgggGCGgccucguggcuCCGGCCGCGGc -3'
miRNA:   3'- -CGGCUUUUUCCUa---UGU-----------GGUCGGCGCU- -5'
29480 3' -51.1 NC_006151.1 + 6203 0.78 0.568982
Target:  5'- gGCCGAAGAGGaGAUccuCGCCggaggAGCCGCGGc -3'
miRNA:   3'- -CGGCUUUUUC-CUAu--GUGG-----UCGGCGCU- -5'
29480 3' -51.1 NC_006151.1 + 6260 0.66 0.991275
Target:  5'- cGUCGggGccGGAcGCGaugcccucuuccUCGGCCGCGGc -3'
miRNA:   3'- -CGGCuuUuuCCUaUGU------------GGUCGGCGCU- -5'
29480 3' -51.1 NC_006151.1 + 7758 0.67 0.98538
Target:  5'- cGCCGggGcGGGAga-ACCGGaCC-CGAa -3'
miRNA:   3'- -CGGCuuUuUCCUaugUGGUC-GGcGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.