miRNA display CGI


Results 1 - 20 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29480 3' -51.1 NC_006151.1 + 48074 1.12 0.005267
Target:  5'- cGCCGAAAAAGGAUACACCAGCCGCGAu -3'
miRNA:   3'- -CGGCUUUUUCCUAUGUGGUCGGCGCU- -5'
29480 3' -51.1 NC_006151.1 + 6108 0.82 0.351963
Target:  5'- gGCCGAAGGAGGAcgggGCGgccucguggcuCCGGCCGCGGc -3'
miRNA:   3'- -CGGCUUUUUCCUa---UGU-----------GGUCGGCGCU- -5'
29480 3' -51.1 NC_006151.1 + 6203 0.78 0.568982
Target:  5'- gGCCGAAGAGGaGAUccuCGCCggaggAGCCGCGGc -3'
miRNA:   3'- -CGGCUUUUUC-CUAu--GUGG-----UCGGCGCU- -5'
29480 3' -51.1 NC_006151.1 + 65468 0.77 0.610035
Target:  5'- cGCCGAGAGucccaucAGGc-GCACCAcGCCGCGGa -3'
miRNA:   3'- -CGGCUUUU-------UCCuaUGUGGU-CGGCGCU- -5'
29480 3' -51.1 NC_006151.1 + 29478 0.77 0.611093
Target:  5'- cGCCGGGAGAGGAaagggcGCGCUGGCCuCGAg -3'
miRNA:   3'- -CGGCUUUUUCCUa-----UGUGGUCGGcGCU- -5'
29480 3' -51.1 NC_006151.1 + 89701 0.77 0.621683
Target:  5'- cGCCGcguccAGGAAcccGGcgGCGCCGGCCGCGGc -3'
miRNA:   3'- -CGGC-----UUUUU---CCuaUGUGGUCGGCGCU- -5'
29480 3' -51.1 NC_006151.1 + 90834 0.76 0.674583
Target:  5'- cGCUGAAcAGGG--GCGCCuGCCGCGGc -3'
miRNA:   3'- -CGGCUUuUUCCuaUGUGGuCGGCGCU- -5'
29480 3' -51.1 NC_006151.1 + 5829 0.75 0.705951
Target:  5'- aGCCGGAGGAGGAg--GCCggggaGGCUGCGGa -3'
miRNA:   3'- -CGGCUUUUUCCUaugUGG-----UCGGCGCU- -5'
29480 3' -51.1 NC_006151.1 + 18418 0.75 0.726544
Target:  5'- cGCCGggGGAGGAgggcCGCCGGCgGgCGu -3'
miRNA:   3'- -CGGCuuUUUCCUau--GUGGUCGgC-GCu -5'
29480 3' -51.1 NC_006151.1 + 90790 0.74 0.756754
Target:  5'- cGCagaaGAAGAAGGuggucgcccGCACCGGCCGCa- -3'
miRNA:   3'- -CGg---CUUUUUCCua-------UGUGGUCGGCGcu -5'
29480 3' -51.1 NC_006151.1 + 108379 0.74 0.756754
Target:  5'- aGCCGAAGGccGGUGCACCGccggacGuCCGCGAc -3'
miRNA:   3'- -CGGCUUUUucCUAUGUGGU------C-GGCGCU- -5'
29480 3' -51.1 NC_006151.1 + 57701 0.74 0.766602
Target:  5'- cGCCGAAGAAGGccacgaGCGCCGGCuugacCGCGc -3'
miRNA:   3'- -CGGCUUUUUCCua----UGUGGUCG-----GCGCu -5'
29480 3' -51.1 NC_006151.1 + 3854 0.74 0.766602
Target:  5'- aGCCGggGaggccgGAGGggGCGCCcGCCGCc- -3'
miRNA:   3'- -CGGCuuU------UUCCuaUGUGGuCGGCGcu -5'
29480 3' -51.1 NC_006151.1 + 17433 0.74 0.776321
Target:  5'- aGCCGggGgcgaucuccGAGGAgcgcaGCACCAcguguuGCCGCGGc -3'
miRNA:   3'- -CGGCuuU---------UUCCUa----UGUGGU------CGGCGCU- -5'
29480 3' -51.1 NC_006151.1 + 105089 0.74 0.776321
Target:  5'- gGCCGucGAGuGGcUGCACCAGgCGCGGc -3'
miRNA:   3'- -CGGCuuUUU-CCuAUGUGGUCgGCGCU- -5'
29480 3' -51.1 NC_006151.1 + 113211 0.74 0.776321
Target:  5'- cGCCGcc-GAGGAgcgccgGCACCGcGCCGUGGa -3'
miRNA:   3'- -CGGCuuuUUCCUa-----UGUGGU-CGGCGCU- -5'
29480 3' -51.1 NC_006151.1 + 65972 0.74 0.776321
Target:  5'- cGUCGAGcc-GGuccuCGCCGGCCGCGAg -3'
miRNA:   3'- -CGGCUUuuuCCuau-GUGGUCGGCGCU- -5'
29480 3' -51.1 NC_006151.1 + 84790 0.74 0.776321
Target:  5'- cGCCGcc-GAGGAgGCGCCcgaggcgaccgcGGCCGCGGa -3'
miRNA:   3'- -CGGCuuuUUCCUaUGUGG------------UCGGCGCU- -5'
29480 3' -51.1 NC_006151.1 + 67868 0.73 0.795334
Target:  5'- cGCCGAGGu-GGcgcgcGCGCCAGCcCGCGGg -3'
miRNA:   3'- -CGGCUUUuuCCua---UGUGGUCG-GCGCU- -5'
29480 3' -51.1 NC_006151.1 + 81889 0.73 0.795334
Target:  5'- cGCCGGcgccGAGGc-GCGCCGGUCGCGGc -3'
miRNA:   3'- -CGGCUuu--UUCCuaUGUGGUCGGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.