miRNA display CGI


Results 21 - 40 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29480 3' -51.1 NC_006151.1 + 139548 0.73 0.804609
Target:  5'- gGUCGggGagcGAGGAgcgGCGcCCGGuCCGCGAg -3'
miRNA:   3'- -CGGCuuU---UUCCUa--UGU-GGUC-GGCGCU- -5'
29480 3' -51.1 NC_006151.1 + 122476 0.73 0.805527
Target:  5'- cGCCGAGGccGGGGAcgcgggcgagacggcGCGCCGGCgCGCGGa -3'
miRNA:   3'- -CGGCUUU--UUCCUa--------------UGUGGUCG-GCGCU- -5'
29480 3' -51.1 NC_006151.1 + 127858 0.73 0.813715
Target:  5'- cGCCGGAGGGGGcgcCGCCcGCCGCc- -3'
miRNA:   3'- -CGGCUUUUUCCuauGUGGuCGGCGcu -5'
29480 3' -51.1 NC_006151.1 + 31673 0.73 0.813715
Target:  5'- gGCgGAGGAAGGGccggGCcgccgaGCCGGCCGCGc -3'
miRNA:   3'- -CGgCUUUUUCCUa---UG------UGGUCGGCGCu -5'
29480 3' -51.1 NC_006151.1 + 40044 0.72 0.83139
Target:  5'- cGCCGggGGcgccguGGAgaccCACCGGCcCGCGGg -3'
miRNA:   3'- -CGGCuuUUu-----CCUau--GUGGUCG-GCGCU- -5'
29480 3' -51.1 NC_006151.1 + 23815 0.72 0.83139
Target:  5'- cGUCGAGAGgcggauccAGGAgGCGCaucucgCAGCCGCGAg -3'
miRNA:   3'- -CGGCUUUU--------UCCUaUGUG------GUCGGCGCU- -5'
29480 3' -51.1 NC_006151.1 + 1838 0.72 0.83139
Target:  5'- cGCCGGgccGAGGGGAccgAgGCCGccGCCGCGGa -3'
miRNA:   3'- -CGGCU---UUUUCCUa--UgUGGU--CGGCGCU- -5'
29480 3' -51.1 NC_006151.1 + 99494 0.72 0.839094
Target:  5'- cCCGAGAAGGGcguggagcacgugGUGCGCCAcugcauggcGCCGCGc -3'
miRNA:   3'- cGGCUUUUUCC-------------UAUGUGGU---------CGGCGCu -5'
29480 3' -51.1 NC_006151.1 + 67961 0.72 0.83994
Target:  5'- cGCCGggGGccAGGAc-CACgCAGUCGCGGc -3'
miRNA:   3'- -CGGCuuUU--UCCUauGUG-GUCGGCGCU- -5'
29480 3' -51.1 NC_006151.1 + 95046 0.72 0.848287
Target:  5'- aGCCGucGAAGGG-GCGCaGGCCGCGc -3'
miRNA:   3'- -CGGCuuUUUCCUaUGUGgUCGGCGCu -5'
29480 3' -51.1 NC_006151.1 + 108732 0.72 0.848287
Target:  5'- cGCCGAGGAGacGGugGC-CCGGCUGCGGa -3'
miRNA:   3'- -CGGCUUUUU--CCuaUGuGGUCGGCGCU- -5'
29480 3' -51.1 NC_006151.1 + 33031 0.72 0.85562
Target:  5'- gGCCGAGGAcgacggggaggggGGGAUGCu---GCCGCGGg -3'
miRNA:   3'- -CGGCUUUU-------------UCCUAUGugguCGGCGCU- -5'
29480 3' -51.1 NC_006151.1 + 33111 0.72 0.856424
Target:  5'- --aGAGGAAGGucuggGCGCguGCCGCGGg -3'
miRNA:   3'- cggCUUUUUCCua---UGUGguCGGCGCU- -5'
29480 3' -51.1 NC_006151.1 + 104613 0.72 0.861991
Target:  5'- cGCCGAGAucugccgcgcgcucGAGGAggugacguacgUGCGCgCGGCCGCcGAc -3'
miRNA:   3'- -CGGCUUU--------------UUCCU-----------AUGUG-GUCGGCG-CU- -5'
29480 3' -51.1 NC_006151.1 + 103210 0.72 0.864343
Target:  5'- cCCGGAcGAGGAgacGCGCguGCgCGCGAu -3'
miRNA:   3'- cGGCUUuUUCCUa--UGUGguCG-GCGCU- -5'
29480 3' -51.1 NC_006151.1 + 118090 0.72 0.864343
Target:  5'- cGCCGAucGAGGc-GCugC-GCCGCGAc -3'
miRNA:   3'- -CGGCUuuUUCCuaUGugGuCGGCGCU- -5'
29480 3' -51.1 NC_006151.1 + 98944 0.72 0.872038
Target:  5'- cGCCGA----GGcgGCGCgGGCCGUGGa -3'
miRNA:   3'- -CGGCUuuuuCCuaUGUGgUCGGCGCU- -5'
29480 3' -51.1 NC_006151.1 + 36916 0.72 0.872038
Target:  5'- cGCCGGAGAGGcGcccucCGCCgcGGCCGCGGc -3'
miRNA:   3'- -CGGCUUUUUC-Cuau--GUGG--UCGGCGCU- -5'
29480 3' -51.1 NC_006151.1 + 80944 0.71 0.879503
Target:  5'- aGCUGggGAugguGGAguugGCGCCGGCCaUGAg -3'
miRNA:   3'- -CGGCuuUUu---CCUa---UGUGGUCGGcGCU- -5'
29480 3' -51.1 NC_006151.1 + 60735 0.71 0.879503
Target:  5'- uGCCGGAGcacGAGGcaGCGgCGGCuCGCGAa -3'
miRNA:   3'- -CGGCUUU---UUCCuaUGUgGUCG-GCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.