miRNA display CGI


Results 1 - 20 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29480 3' -51.1 NC_006151.1 + 141619 0.68 0.974228
Target:  5'- uGCCGGGAucGGGcggguCGCU-GCCGCGGc -3'
miRNA:   3'- -CGGCUUUuuCCUau---GUGGuCGGCGCU- -5'
29480 3' -51.1 NC_006151.1 + 141249 0.66 0.988622
Target:  5'- -aCGGAGggcGAGGAgau-CCAGUCGCGGg -3'
miRNA:   3'- cgGCUUU---UUCCUauguGGUCGGCGCU- -5'
29480 3' -51.1 NC_006151.1 + 139548 0.73 0.804609
Target:  5'- gGUCGggGagcGAGGAgcgGCGcCCGGuCCGCGAg -3'
miRNA:   3'- -CGGCuuU---UUCCUa--UGU-GGUC-GGCGCU- -5'
29480 3' -51.1 NC_006151.1 + 138972 0.67 0.983516
Target:  5'- gGCCGAGcucGcGAcGCGCCGcGCCGCGc -3'
miRNA:   3'- -CGGCUUuuuC-CUaUGUGGU-CGGCGCu -5'
29480 3' -51.1 NC_006151.1 + 138628 0.66 0.991275
Target:  5'- cGCCGcc-GGGGGcGCGCCGGaCUGgGAg -3'
miRNA:   3'- -CGGCuuuUUCCUaUGUGGUC-GGCgCU- -5'
29480 3' -51.1 NC_006151.1 + 137408 0.67 0.983516
Target:  5'- cGCCGG--GGGGcgcccuCGCCGccGCCGCGGg -3'
miRNA:   3'- -CGGCUuuUUCCuau---GUGGU--CGGCGCU- -5'
29480 3' -51.1 NC_006151.1 + 137153 0.7 0.919177
Target:  5'- cGCCGGAGAuGGccgcGCACgAGCCgGCGGc -3'
miRNA:   3'- -CGGCUUUUuCCua--UGUGgUCGG-CGCU- -5'
29480 3' -51.1 NC_006151.1 + 136779 0.68 0.968053
Target:  5'- cGCCGGcuacguGGAGGAccgcacgUACGCCGcGCuCGCGGc -3'
miRNA:   3'- -CGGCUu-----UUUCCU-------AUGUGGU-CG-GCGCU- -5'
29480 3' -51.1 NC_006151.1 + 135310 0.66 0.987714
Target:  5'- cGCCGAccGAGAGG-UACaggugcaugagcgccGCCAGgcacguguCCGCGAg -3'
miRNA:   3'- -CGGCU--UUUUCCuAUG---------------UGGUC--------GGCGCU- -5'
29480 3' -51.1 NC_006151.1 + 135132 0.66 0.990017
Target:  5'- gGCUGGGcgGGGAcggGCAgacCCAGCCcgGCGGg -3'
miRNA:   3'- -CGGCUUuuUCCUa--UGU---GGUCGG--CGCU- -5'
29480 3' -51.1 NC_006151.1 + 135101 0.66 0.988622
Target:  5'- gGCCGGGc-GGGcgGCGgUAGCgCGCGGg -3'
miRNA:   3'- -CGGCUUuuUCCuaUGUgGUCG-GCGCU- -5'
29480 3' -51.1 NC_006151.1 + 133610 0.69 0.944808
Target:  5'- gGCCGAGGggcgucuGGGGGUcGCGgCGGCCGgGGc -3'
miRNA:   3'- -CGGCUUU-------UUCCUA-UGUgGUCGGCgCU- -5'
29480 3' -51.1 NC_006151.1 + 131898 0.67 0.98538
Target:  5'- gGCCGAGGGcgacGGGGgcgGCAgCAGggccuCCGCGGu -3'
miRNA:   3'- -CGGCUUUU----UCCUa--UGUgGUC-----GGCGCU- -5'
29480 3' -51.1 NC_006151.1 + 131102 0.7 0.919177
Target:  5'- cGUCGGc--GGGggGC-CCGGCCGCGGc -3'
miRNA:   3'- -CGGCUuuuUCCuaUGuGGUCGGCGCU- -5'
29480 3' -51.1 NC_006151.1 + 131048 0.66 0.988622
Target:  5'- cGUCGggGccGGAgGCcgucuCCAuGCCGCGGa -3'
miRNA:   3'- -CGGCuuUuuCCUaUGu----GGU-CGGCGCU- -5'
29480 3' -51.1 NC_006151.1 + 130964 0.67 0.976842
Target:  5'- gGCgCGggGGccGGUACcCCGGCCGCc- -3'
miRNA:   3'- -CG-GCuuUUucCUAUGuGGUCGGCGcu -5'
29480 3' -51.1 NC_006151.1 + 130285 0.67 0.979256
Target:  5'- gGCCGc---GGGcgcGCGCCGGCCGaCGGc -3'
miRNA:   3'- -CGGCuuuuUCCua-UGUGGUCGGC-GCU- -5'
29480 3' -51.1 NC_006151.1 + 130255 0.7 0.93038
Target:  5'- gGCgCGGAAGAGGccgGCGCgCGGCCcCGAg -3'
miRNA:   3'- -CG-GCUUUUUCCua-UGUG-GUCGGcGCU- -5'
29480 3' -51.1 NC_006151.1 + 128465 0.66 0.988622
Target:  5'- cGCCGAGGAucuccAGGGcgucaaACACCGucGCCGUGu -3'
miRNA:   3'- -CGGCUUUU-----UCCUa-----UGUGGU--CGGCGCu -5'
29480 3' -51.1 NC_006151.1 + 127858 0.73 0.813715
Target:  5'- cGCCGGAGGGGGcgcCGCCcGCCGCc- -3'
miRNA:   3'- -CGGCUUUUUCCuauGUGGuCGGCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.