miRNA display CGI


Results 41 - 60 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29483 3' -64.6 NC_006151.1 + 52379 0.67 0.493018
Target:  5'- cCCCGGGGCccgcggGGGCggCgGGCGcCgccGCg -3'
miRNA:   3'- -GGGCCCCG------CCCGgaGgCCGCaGau-CG- -5'
29483 3' -64.6 NC_006151.1 + 117784 0.67 0.493018
Target:  5'- cUCCGGGcGgGGcGCCacgcCCGGCGg--GGCg -3'
miRNA:   3'- -GGGCCC-CgCC-CGGa---GGCCGCagaUCG- -5'
29483 3' -64.6 NC_006151.1 + 2621 0.67 0.493018
Target:  5'- aCCGGGGUccGGGgC-CCGGCG-CgGGUg -3'
miRNA:   3'- gGGCCCCG--CCCgGaGGCCGCaGaUCG- -5'
29483 3' -64.6 NC_006151.1 + 67516 0.67 0.49033
Target:  5'- gUCCGGGuccaGGGCCaccaggcgccagCCGGCGUCguugaccaccacgUGGCg -3'
miRNA:   3'- -GGGCCCcg--CCCGGa-----------GGCCGCAG-------------AUCG- -5'
29483 3' -64.6 NC_006151.1 + 131909 0.67 0.49033
Target:  5'- aCgGGGGCggcagcaGGGCCUCC-GCGgugcugccguagCUGGCc -3'
miRNA:   3'- gGgCCCCG-------CCCGGAGGcCGCa-----------GAUCG- -5'
29483 3' -64.6 NC_006151.1 + 102884 0.67 0.489436
Target:  5'- gCCgCGGuGGCGGGCCUgCGcCGccucgucgacucgCUGGCg -3'
miRNA:   3'- -GG-GCC-CCGCCCGGAgGCcGCa------------GAUCG- -5'
29483 3' -64.6 NC_006151.1 + 64785 0.67 0.484975
Target:  5'- gCCGGGGCGcgagcuGGCCacgcccucgcggaagCCGGCGgCcAGCu -3'
miRNA:   3'- gGGCCCCGC------CCGGa--------------GGCCGCaGaUCG- -5'
29483 3' -64.6 NC_006151.1 + 19055 0.67 0.47523
Target:  5'- aCCGGGcGCaGGCaCUCgGGCG-CgcGCg -3'
miRNA:   3'- gGGCCC-CGcCCG-GAGgCCGCaGauCG- -5'
29483 3' -64.6 NC_006151.1 + 5672 0.67 0.47523
Target:  5'- gCUGGGgaaGCGGGCCcccgccgugCCGGCG-CUgcGGCc -3'
miRNA:   3'- gGGCCC---CGCCCGGa--------GGCCGCaGA--UCG- -5'
29483 3' -64.6 NC_006151.1 + 8492 0.67 0.471711
Target:  5'- -aCGGGGCGGGCggggagggugucgUCUGuGUGUCUGuGCg -3'
miRNA:   3'- ggGCCCCGCCCGg------------AGGC-CGCAGAU-CG- -5'
29483 3' -64.6 NC_006151.1 + 69965 0.67 0.466457
Target:  5'- cCCCGGGGCcgcgcGGGCgCUgcagCGGCGgc-AGCg -3'
miRNA:   3'- -GGGCCCCG-----CCCG-GAg---GCCGCagaUCG- -5'
29483 3' -64.6 NC_006151.1 + 2103 0.67 0.457768
Target:  5'- gCCCGa-GCGGGCCgcggggCCGGcCGUCgccGCc -3'
miRNA:   3'- -GGGCccCGCCCGGa-----GGCC-GCAGau-CG- -5'
29483 3' -64.6 NC_006151.1 + 8236 0.67 0.457768
Target:  5'- uCCCGGcGGggaGGGCCgggCCGGCGcgCcGGg -3'
miRNA:   3'- -GGGCC-CCg--CCCGGa--GGCCGCa-GaUCg -5'
29483 3' -64.6 NC_006151.1 + 38390 0.67 0.457768
Target:  5'- gCCGGcggcGGCGGGCgccccCUCCGGCcUCcccGGCu -3'
miRNA:   3'- gGGCC----CCGCCCG-----GAGGCCGcAGa--UCG- -5'
29483 3' -64.6 NC_006151.1 + 126132 0.68 0.449167
Target:  5'- uUCGGGGCgcucgccaucGGGCUgCUGGUG-CUGGCc -3'
miRNA:   3'- gGGCCCCG----------CCCGGaGGCCGCaGAUCG- -5'
29483 3' -64.6 NC_006151.1 + 28802 0.68 0.449167
Target:  5'- gCCCGcGGGaCGGGCgUCCGG-GaCcGGCc -3'
miRNA:   3'- -GGGC-CCC-GCCCGgAGGCCgCaGaUCG- -5'
29483 3' -64.6 NC_006151.1 + 28521 0.68 0.449167
Target:  5'- gCCCGcGGGaCGGGCgUCCGG-GaCcGGCc -3'
miRNA:   3'- -GGGC-CCC-GCCCGgAGGCCgCaGaUCG- -5'
29483 3' -64.6 NC_006151.1 + 80340 0.68 0.444049
Target:  5'- aCCGGGGCGagggcGGCuCUCCGccCGUCUcacacacaaccggguAGCg -3'
miRNA:   3'- gGGCCCCGC-----CCG-GAGGCc-GCAGA---------------UCG- -5'
29483 3' -64.6 NC_006151.1 + 28839 0.68 0.441502
Target:  5'- cCCCGGGgacGCGGGCCcggcucccccauuggCCGGCGcgUCcccggaGGCg -3'
miRNA:   3'- -GGGCCC---CGCCCGGa--------------GGCCGC--AGa-----UCG- -5'
29483 3' -64.6 NC_006151.1 + 19281 0.68 0.440655
Target:  5'- gCgCGGGGCccaccgGGGCCagCGGCG-CgGGCg -3'
miRNA:   3'- -GgGCCCCG------CCCGGagGCCGCaGaUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.