miRNA display CGI


Results 21 - 40 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29483 3' -64.6 NC_006151.1 + 14648 0.66 0.529463
Target:  5'- gCCGGGcuCGGGuCCgguuccgggUCGGCGUCggggAGCc -3'
miRNA:   3'- gGGCCCc-GCCC-GGa--------GGCCGCAGa---UCG- -5'
29483 3' -64.6 NC_006151.1 + 127544 0.66 0.529463
Target:  5'- gCCCagGGGGCGucgucgucguGGCCgccgCCGGCGcCUcGUu -3'
miRNA:   3'- -GGG--CCCCGC----------CCGGa---GGCCGCaGAuCG- -5'
29483 3' -64.6 NC_006151.1 + 133473 0.66 0.529463
Target:  5'- gCCCGcGaGGC-GGCCgCgGGCGUCaccuUGGCg -3'
miRNA:   3'- -GGGC-C-CCGcCCGGaGgCCGCAG----AUCG- -5'
29483 3' -64.6 NC_006151.1 + 142586 0.66 0.529463
Target:  5'- cUCCGGucccGGCgGGGCuCUCCucuaGUCUGGCa -3'
miRNA:   3'- -GGGCC----CCG-CCCG-GAGGccg-CAGAUCG- -5'
29483 3' -64.6 NC_006151.1 + 39478 0.66 0.528539
Target:  5'- gCCCGGGugccgcgagcuccGCGcGGCCgugCUGGacUCUAGCu -3'
miRNA:   3'- -GGGCCC-------------CGC-CCGGa--GGCCgcAGAUCG- -5'
29483 3' -64.6 NC_006151.1 + 6019 0.66 0.526694
Target:  5'- gCCGGGGaccCGGGCUcgUCCuccuccucgucuucGuCGUCUAGCa -3'
miRNA:   3'- gGGCCCC---GCCCGG--AGG--------------CcGCAGAUCG- -5'
29483 3' -64.6 NC_006151.1 + 15045 0.66 0.520253
Target:  5'- uCCaCGGcGcGCgGGGCC-CCGGCGcCUucuGCg -3'
miRNA:   3'- -GG-GCC-C-CG-CCCGGaGGCCGCaGAu--CG- -5'
29483 3' -64.6 NC_006151.1 + 18549 0.66 0.520253
Target:  5'- aCCCGGaacggccGCGaGGCCgcCCGGCGgCgggAGCa -3'
miRNA:   3'- -GGGCCc------CGC-CCGGa-GGCCGCaGa--UCG- -5'
29483 3' -64.6 NC_006151.1 + 86575 0.66 0.520253
Target:  5'- uCUCGGcGCGGGCgcgCUCCGaGCuG-CUGGCg -3'
miRNA:   3'- -GGGCCcCGCCCG---GAGGC-CG-CaGAUCG- -5'
29483 3' -64.6 NC_006151.1 + 24242 0.66 0.520253
Target:  5'- gCUGGcGGUGGGUC-CCGGCGUa---- -3'
miRNA:   3'- gGGCC-CCGCCCGGaGGCCGCAgaucg -5'
29483 3' -64.6 NC_006151.1 + 87896 0.66 0.520253
Target:  5'- gCgCGGGGCGucacGGCCccgcCCGGCGg-UAGUa -3'
miRNA:   3'- -GgGCCCCGC----CCGGa---GGCCGCagAUCG- -5'
29483 3' -64.6 NC_006151.1 + 133164 0.66 0.520253
Target:  5'- gCgCGGGcGUGGGCCUCgGccacGCGUCccacGGCc -3'
miRNA:   3'- -GgGCCC-CGCCCGGAGgC----CGCAGa---UCG- -5'
29483 3' -64.6 NC_006151.1 + 81718 0.66 0.517502
Target:  5'- gCCGGGGCgccGGGuCCUCgccgaagguccaggCGGCGcggagCUGGUc -3'
miRNA:   3'- gGGCCCCG---CCC-GGAG--------------GCCGCa----GAUCG- -5'
29483 3' -64.6 NC_006151.1 + 4610 0.67 0.511106
Target:  5'- gCCgUGGGGCGcguGGaC-CCGGCG-CUGGCa -3'
miRNA:   3'- -GG-GCCCCGC---CCgGaGGCCGCaGAUCG- -5'
29483 3' -64.6 NC_006151.1 + 121936 0.67 0.511106
Target:  5'- gCUgGGGGCGcuGGCCgccgCCGGCGaCgacGCc -3'
miRNA:   3'- -GGgCCCCGC--CCGGa---GGCCGCaGau-CG- -5'
29483 3' -64.6 NC_006151.1 + 13994 0.67 0.511106
Target:  5'- cCCCGGGGCccacguguGaGGCC-CCGGCcaaugGGCc -3'
miRNA:   3'- -GGGCCCCG--------C-CCGGaGGCCGcaga-UCG- -5'
29483 3' -64.6 NC_006151.1 + 112585 0.67 0.511106
Target:  5'- gCCCGcGGGCuucguggaGGCCgccgCGGCGccgCUGGCg -3'
miRNA:   3'- -GGGC-CCCGc-------CCGGag--GCCGCa--GAUCG- -5'
29483 3' -64.6 NC_006151.1 + 25201 0.67 0.511106
Target:  5'- cCCCaagauGGGCGuGGCCUC-GGCGg--AGCc -3'
miRNA:   3'- -GGGc----CCCGC-CCGGAGgCCGCagaUCG- -5'
29483 3' -64.6 NC_006151.1 + 56933 0.67 0.502026
Target:  5'- -aUGGcGGCGGGgCgucgCCGGCG-CUcAGCg -3'
miRNA:   3'- ggGCC-CCGCCCgGa---GGCCGCaGA-UCG- -5'
29483 3' -64.6 NC_006151.1 + 52379 0.67 0.493018
Target:  5'- cCCCGGGGCccgcggGGGCggCgGGCGcCgccGCg -3'
miRNA:   3'- -GGGCCCCG------CCCGgaGgCCGCaGau-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.