Results 21 - 40 of 149 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29483 | 3' | -64.6 | NC_006151.1 | + | 104273 | 0.66 | 0.566852 |
Target: 5'- gCgCGGcGGCGGGCCcgCCgcugcaGGCG-CUgcAGCg -3' miRNA: 3'- -GgGCC-CCGCCCGGa-GG------CCGCaGA--UCG- -5' |
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29483 | 3' | -64.6 | NC_006151.1 | + | 82295 | 0.66 | 0.566852 |
Target: 5'- gCCgCGGGGCaGcGcGCCUCCG-CGUCc-GCg -3' miRNA: 3'- -GG-GCCCCG-C-C-CGGAGGCcGCAGauCG- -5' |
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29483 | 3' | -64.6 | NC_006151.1 | + | 79995 | 0.66 | 0.566852 |
Target: 5'- cCUCGGGGCGGGUaaaaaaUUCUugaacGCGUUcGGCg -3' miRNA: 3'- -GGGCCCCGCCCG------GAGGc----CGCAGaUCG- -5' |
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29483 | 3' | -64.6 | NC_006151.1 | + | 36035 | 0.66 | 0.566852 |
Target: 5'- uCCCGGcgccGCGGcuCCUCCGGCGaggaucuccUCUucGGCc -3' miRNA: 3'- -GGGCCc---CGCCc-GGAGGCCGC---------AGA--UCG- -5' |
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29483 | 3' | -64.6 | NC_006151.1 | + | 68015 | 0.66 | 0.565908 |
Target: 5'- gCUCGGcGGCGuccagguccaggcGGCCcgCCGGCG-CggcgGGCa -3' miRNA: 3'- -GGGCC-CCGC-------------CCGGa-GGCCGCaGa---UCG- -5' |
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29483 | 3' | -64.6 | NC_006151.1 | + | 3954 | 0.66 | 0.557432 |
Target: 5'- cUCCGcGGGCccGGGCCgCgCGGCGgcCUcGGCg -3' miRNA: 3'- -GGGC-CCCG--CCCGGaG-GCCGCa-GA-UCG- -5' |
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29483 | 3' | -64.6 | NC_006151.1 | + | 13435 | 0.66 | 0.548057 |
Target: 5'- cCCCGGGGCccgcauuGGCCggucCCGGacgccCGUCccGCg -3' miRNA: 3'- -GGGCCCCGc------CCGGa---GGCC-----GCAGauCG- -5' |
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29483 | 3' | -64.6 | NC_006151.1 | + | 141661 | 0.66 | 0.547122 |
Target: 5'- cCCCGcGGGCucguuguGGaggcaugucuGCCUCCcacGGCGgCUGGCg -3' miRNA: 3'- -GGGC-CCCG-------CC----------CGGAGG---CCGCaGAUCG- -5' |
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29483 | 3' | -64.6 | NC_006151.1 | + | 33957 | 0.66 | 0.548057 |
Target: 5'- gCUCGGGGCGGGaCg-CGGCG-CccGCg -3' miRNA: 3'- -GGGCCCCGCCCgGagGCCGCaGauCG- -5' |
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29483 | 3' | -64.6 | NC_006151.1 | + | 38312 | 0.66 | 0.548057 |
Target: 5'- gCCCGGGcccGCGGaGCCcgcgcCCGGCcugcccccgcUCUGGCc -3' miRNA: 3'- -GGGCCC---CGCC-CGGa----GGCCGc---------AGAUCG- -5' |
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29483 | 3' | -64.6 | NC_006151.1 | + | 136989 | 0.66 | 0.548057 |
Target: 5'- gCCgGGcGGCGGGCgCgcgcgCaCGGCG-CUGGg -3' miRNA: 3'- -GGgCC-CCGCCCG-Ga----G-GCCGCaGAUCg -5' |
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29483 | 3' | -64.6 | NC_006151.1 | + | 130720 | 0.66 | 0.548057 |
Target: 5'- gCCCGGGggcccGCGcGGCCg-CGGCG-C-AGCg -3' miRNA: 3'- -GGGCCC-----CGC-CCGGagGCCGCaGaUCG- -5' |
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29483 | 3' | -64.6 | NC_006151.1 | + | 6120 | 0.66 | 0.548057 |
Target: 5'- -aCGGGGC-GGCCUCgUGGC-UCcGGCc -3' miRNA: 3'- ggGCCCCGcCCGGAG-GCCGcAGaUCG- -5' |
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29483 | 3' | -64.6 | NC_006151.1 | + | 76809 | 0.67 | 0.493018 |
Target: 5'- cCCCGgcgaGGGCGGGCgCguaguggcggCCcGCGUCcgGGCg -3' miRNA: 3'- -GGGC----CCCGCCCG-Ga---------GGcCGCAGa-UCG- -5' |
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29483 | 3' | -64.6 | NC_006151.1 | + | 56933 | 0.67 | 0.502026 |
Target: 5'- -aUGGcGGCGGGgCgucgCCGGCG-CUcAGCg -3' miRNA: 3'- ggGCC-CCGCCCgGa---GGCCGCaGA-UCG- -5' |
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29483 | 3' | -64.6 | NC_006151.1 | + | 4610 | 0.67 | 0.511106 |
Target: 5'- gCCgUGGGGCGcguGGaC-CCGGCG-CUGGCa -3' miRNA: 3'- -GG-GCCCCGC---CCgGaGGCCGCaGAUCG- -5' |
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29483 | 3' | -64.6 | NC_006151.1 | + | 121936 | 0.67 | 0.511106 |
Target: 5'- gCUgGGGGCGcuGGCCgccgCCGGCGaCgacGCc -3' miRNA: 3'- -GGgCCCCGC--CCGGa---GGCCGCaGau-CG- -5' |
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29483 | 3' | -64.6 | NC_006151.1 | + | 13994 | 0.67 | 0.511106 |
Target: 5'- cCCCGGGGCccacguguGaGGCC-CCGGCcaaugGGCc -3' miRNA: 3'- -GGGCCCCG--------C-CCGGaGGCCGcaga-UCG- -5' |
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29483 | 3' | -64.6 | NC_006151.1 | + | 112585 | 0.67 | 0.511106 |
Target: 5'- gCCCGcGGGCuucguggaGGCCgccgCGGCGccgCUGGCg -3' miRNA: 3'- -GGGC-CCCGc-------CCGGag--GCCGCa--GAUCG- -5' |
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29483 | 3' | -64.6 | NC_006151.1 | + | 52379 | 0.67 | 0.493018 |
Target: 5'- cCCCGGGGCccgcggGGGCggCgGGCGcCgccGCg -3' miRNA: 3'- -GGGCCCCG------CCCGgaGgCCGCaGau-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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