miRNA display CGI


Results 21 - 40 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29483 3' -64.6 NC_006151.1 + 8236 0.67 0.457768
Target:  5'- uCCCGGcGGggaGGGCCgggCCGGCGcgCcGGg -3'
miRNA:   3'- -GGGCC-CCg--CCCGGa--GGCCGCa-GaUCg -5'
29483 3' -64.6 NC_006151.1 + 8324 0.69 0.353534
Target:  5'- cCCCGGGGCgcgcGGGCCUcgaucgcgcccgCCGGaCG-CggaGGCg -3'
miRNA:   3'- -GGGCCCCG----CCCGGA------------GGCC-GCaGa--UCG- -5'
29483 3' -64.6 NC_006151.1 + 8492 0.67 0.471711
Target:  5'- -aCGGGGCGGGCggggagggugucgUCUGuGUGUCUGuGCg -3'
miRNA:   3'- ggGCCCCGCCCGg------------AGGC-CGCAGAU-CG- -5'
29483 3' -64.6 NC_006151.1 + 10286 0.69 0.360934
Target:  5'- uCCCaGGcGGCGGGCacgUCCcGCGUCcccGGCg -3'
miRNA:   3'- -GGG-CC-CCGCCCGg--AGGcCGCAGa--UCG- -5'
29483 3' -64.6 NC_006151.1 + 10424 0.74 0.194186
Target:  5'- gCCGcGGGUGGGCCgaggCCGGCGgggAGg -3'
miRNA:   3'- gGGC-CCCGCCCGGa---GGCCGCagaUCg -5'
29483 3' -64.6 NC_006151.1 + 10916 0.74 0.181001
Target:  5'- aCCGGGGuCGGGCC-CaCGGCGcCgagggugGGCg -3'
miRNA:   3'- gGGCCCC-GCCCGGaG-GCCGCaGa------UCG- -5'
29483 3' -64.6 NC_006151.1 + 13023 0.72 0.24433
Target:  5'- cCUCGGGGCGcGGCCgacCCGGCGg----- -3'
miRNA:   3'- -GGGCCCCGC-CCGGa--GGCCGCagaucg -5'
29483 3' -64.6 NC_006151.1 + 13435 0.66 0.548057
Target:  5'- cCCCGGGGCccgcauuGGCCggucCCGGacgccCGUCccGCg -3'
miRNA:   3'- -GGGCCCCGc------CCGGa---GGCC-----GCAGauCG- -5'
29483 3' -64.6 NC_006151.1 + 13939 0.7 0.346242
Target:  5'- cCCCgGGGGCGGGCgCcCCGGgGaCgcGCc -3'
miRNA:   3'- -GGG-CCCCGCCCG-GaGGCCgCaGauCG- -5'
29483 3' -64.6 NC_006151.1 + 13994 0.67 0.511106
Target:  5'- cCCCGGGGCccacguguGaGGCC-CCGGCcaaugGGCc -3'
miRNA:   3'- -GGGCCCCG--------C-CCGGaGGCCGcaga-UCG- -5'
29483 3' -64.6 NC_006151.1 + 14266 0.72 0.238867
Target:  5'- gUCGGGGUGGGCCgggagUgGGCGU--GGCa -3'
miRNA:   3'- gGGCCCCGCCCGGa----GgCCGCAgaUCG- -5'
29483 3' -64.6 NC_006151.1 + 14648 0.66 0.529463
Target:  5'- gCCGGGcuCGGGuCCgguuccgggUCGGCGUCggggAGCc -3'
miRNA:   3'- gGGCCCc-GCCC-GGa--------GGCCGCAGa---UCG- -5'
29483 3' -64.6 NC_006151.1 + 15045 0.66 0.520253
Target:  5'- uCCaCGGcGcGCgGGGCC-CCGGCGcCUucuGCg -3'
miRNA:   3'- -GG-GCC-C-CG-CCCGGaGGCCGCaGAu--CG- -5'
29483 3' -64.6 NC_006151.1 + 16935 0.68 0.410795
Target:  5'- cCCCGGGucacgaucugggcauGCaGGGCCUcguccacucgCCGGCGU--GGCg -3'
miRNA:   3'- -GGGCCC---------------CG-CCCGGA----------GGCCGCAgaUCG- -5'
29483 3' -64.6 NC_006151.1 + 17105 0.71 0.285513
Target:  5'- gUCGGGGCgccgGGGgCUCCGGCGgcggugCU-GCg -3'
miRNA:   3'- gGGCCCCG----CCCgGAGGCCGCa-----GAuCG- -5'
29483 3' -64.6 NC_006151.1 + 18213 0.76 0.135902
Target:  5'- -gCGGGGCGGGCaUUCaacaGGCGgCUGGCg -3'
miRNA:   3'- ggGCCCCGCCCG-GAGg---CCGCaGAUCG- -5'
29483 3' -64.6 NC_006151.1 + 18419 0.72 0.255568
Target:  5'- gCCGGGGgaggaGGGCCgCCGGCG---GGCg -3'
miRNA:   3'- gGGCCCCg----CCCGGaGGCCGCagaUCG- -5'
29483 3' -64.6 NC_006151.1 + 18549 0.66 0.520253
Target:  5'- aCCCGGaacggccGCGaGGCCgcCCGGCGgCgggAGCa -3'
miRNA:   3'- -GGGCCc------CGC-CCGGa-GGCCGCaGa--UCG- -5'
29483 3' -64.6 NC_006151.1 + 18688 0.69 0.399526
Target:  5'- uCCaCGGGcgcGCGGGCggcgCCGGCGUCgugacGCc -3'
miRNA:   3'- -GG-GCCC---CGCCCGga--GGCCGCAGau---CG- -5'
29483 3' -64.6 NC_006151.1 + 18770 0.72 0.24433
Target:  5'- gCCCGGGGCccGGGCCgg-GGCcGUC-AGCu -3'
miRNA:   3'- -GGGCCCCG--CCCGGaggCCG-CAGaUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.