miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29483 3' -64.6 NC_006151.1 + 665 0.7 0.325017
Target:  5'- gCCGGGGCGGG-CUCCgcggaucgcaucGGCG-CgccgAGCc -3'
miRNA:   3'- gGGCCCCGCCCgGAGG------------CCGCaGa---UCG- -5'
29483 3' -64.6 NC_006151.1 + 2103 0.67 0.457768
Target:  5'- gCCCGa-GCGGGCCgcggggCCGGcCGUCgccGCc -3'
miRNA:   3'- -GGGCccCGCCCGGa-----GGCC-GCAGau-CG- -5'
29483 3' -64.6 NC_006151.1 + 2173 0.74 0.1897
Target:  5'- gCCGGGGCcGGCC-CCGGCGcCcgaGGCc -3'
miRNA:   3'- gGGCCCCGcCCGGaGGCCGCaGa--UCG- -5'
29483 3' -64.6 NC_006151.1 + 2200 0.68 0.407555
Target:  5'- cCCCGcGGGCcgguGGGUCUCCacGGCGcCcccGGCg -3'
miRNA:   3'- -GGGC-CCCG----CCCGGAGG--CCGCaGa--UCG- -5'
29483 3' -64.6 NC_006151.1 + 2311 0.74 0.176368
Target:  5'- gCCCGGGGUcagcaccagcgggGcGGCCU-CGGCGUCgGGCu -3'
miRNA:   3'- -GGGCCCCG-------------C-CCGGAgGCCGCAGaUCG- -5'
29483 3' -64.6 NC_006151.1 + 2621 0.67 0.493018
Target:  5'- aCCGGGGUccGGGgC-CCGGCG-CgGGUg -3'
miRNA:   3'- gGGCCCCG--CCCgGaGGCCGCaGaUCG- -5'
29483 3' -64.6 NC_006151.1 + 2697 0.69 0.379131
Target:  5'- cCCCGGGGUGcaggcgggcgaaggaGGCCUCCacgcgGGCGa--AGCa -3'
miRNA:   3'- -GGGCCCCGC---------------CCGGAGG-----CCGCagaUCG- -5'
29483 3' -64.6 NC_006151.1 + 2870 0.7 0.346242
Target:  5'- gCCGGGccguccGCGGGCCagUCCucgauGGUGUCcAGCa -3'
miRNA:   3'- gGGCCC------CGCCCGG--AGG-----CCGCAGaUCG- -5'
29483 3' -64.6 NC_006151.1 + 3133 0.68 0.432236
Target:  5'- gCCGGGcGCGGGgCgcccUCGGCGggCUcGGCg -3'
miRNA:   3'- gGGCCC-CGCCCgGa---GGCCGCa-GA-UCG- -5'
29483 3' -64.6 NC_006151.1 + 3677 0.73 0.203437
Target:  5'- cCCCGGGGCggcGGGCC-CCgGGCGcgcGGCg -3'
miRNA:   3'- -GGGCCCCG---CCCGGaGG-CCGCagaUCG- -5'
29483 3' -64.6 NC_006151.1 + 3722 0.71 0.291825
Target:  5'- gCUCGGGcGCuGGGuCCgggCCGGCGgcgggggagCUGGCg -3'
miRNA:   3'- -GGGCCC-CG-CCC-GGa--GGCCGCa--------GAUCG- -5'
29483 3' -64.6 NC_006151.1 + 3954 0.66 0.557432
Target:  5'- cUCCGcGGGCccGGGCCgCgCGGCGgcCUcGGCg -3'
miRNA:   3'- -GGGC-CCCG--CCCGGaG-GCCGCa-GA-UCG- -5'
29483 3' -64.6 NC_006151.1 + 4008 0.7 0.31816
Target:  5'- gCCGGGGCgaagaGGGCCg-CGGCGUagguccaGGCg -3'
miRNA:   3'- gGGCCCCG-----CCCGGagGCCGCAga-----UCG- -5'
29483 3' -64.6 NC_006151.1 + 4610 0.67 0.511106
Target:  5'- gCCgUGGGGCGcguGGaC-CCGGCG-CUGGCa -3'
miRNA:   3'- -GG-GCCCCGC---CCgGaGGCCGCaGAUCG- -5'
29483 3' -64.6 NC_006151.1 + 5016 0.66 0.529463
Target:  5'- gCC-GGGCGGG-CUCCGGgGcCggGGCc -3'
miRNA:   3'- gGGcCCCGCCCgGAGGCCgCaGa-UCG- -5'
29483 3' -64.6 NC_006151.1 + 5090 0.69 0.399526
Target:  5'- gCCGcGGCGGGCg-CCGGCGgagacggUGGCg -3'
miRNA:   3'- gGGCcCCGCCCGgaGGCCGCag-----AUCG- -5'
29483 3' -64.6 NC_006151.1 + 5672 0.67 0.47523
Target:  5'- gCUGGGgaaGCGGGCCcccgccgugCCGGCG-CUgcGGCc -3'
miRNA:   3'- gGGCCC---CGCCCGGa--------GGCCGCaGA--UCG- -5'
29483 3' -64.6 NC_006151.1 + 5871 0.76 0.13265
Target:  5'- gCCCGGGGCcgccggGGGCC-CCGGCcUCUGccGCu -3'
miRNA:   3'- -GGGCCCCG------CCCGGaGGCCGcAGAU--CG- -5'
29483 3' -64.6 NC_006151.1 + 6019 0.66 0.526694
Target:  5'- gCCGGGGaccCGGGCUcgUCCuccuccucgucuucGuCGUCUAGCa -3'
miRNA:   3'- gGGCCCC---GCCCGG--AGG--------------CcGCAGAUCG- -5'
29483 3' -64.6 NC_006151.1 + 6120 0.66 0.548057
Target:  5'- -aCGGGGC-GGCCUCgUGGC-UCcGGCc -3'
miRNA:   3'- ggGCCCCGcCCGGAG-GCCGcAGaUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.