miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29483 3' -64.6 NC_006151.1 + 142586 0.66 0.529463
Target:  5'- cUCCGGucccGGCgGGGCuCUCCucuaGUCUGGCa -3'
miRNA:   3'- -GGGCC----CCG-CCCG-GAGGccg-CAGAUCG- -5'
29483 3' -64.6 NC_006151.1 + 141812 0.68 0.432236
Target:  5'- cCCCGaGGGCacGGGCCgguUCgGGgGUCccGCg -3'
miRNA:   3'- -GGGC-CCCG--CCCGG---AGgCCgCAGauCG- -5'
29483 3' -64.6 NC_006151.1 + 141661 0.66 0.547122
Target:  5'- cCCCGcGGGCucguuguGGaggcaugucuGCCUCCcacGGCGgCUGGCg -3'
miRNA:   3'- -GGGC-CCCG-------CC----------CGGAGG---CCGCaGAUCG- -5'
29483 3' -64.6 NC_006151.1 + 141473 0.66 0.537803
Target:  5'- gCCgGGGGCGccgaguccgaGaGCCUCCgcggcgacgGGCGUCUccacgggggccgaGGCg -3'
miRNA:   3'- -GGgCCCCGC----------C-CGGAGG---------CCGCAGA-------------UCG- -5'
29483 3' -64.6 NC_006151.1 + 141379 0.74 0.193733
Target:  5'- aCgGGGGCGGGCC-CCGGgcaaacagcggcgUGUCcGGCg -3'
miRNA:   3'- gGgCCCCGCCCGGaGGCC-------------GCAGaUCG- -5'
29483 3' -64.6 NC_006151.1 + 139616 0.72 0.238867
Target:  5'- gUCCGGGcGCggcuggGGGCCaUCCGGCG-CcGGCg -3'
miRNA:   3'- -GGGCCC-CG------CCCGG-AGGCCGCaGaUCG- -5'
29483 3' -64.6 NC_006151.1 + 136989 0.66 0.548057
Target:  5'- gCCgGGcGGCGGGCgCgcgcgCaCGGCG-CUGGg -3'
miRNA:   3'- -GGgCC-CCGCCCG-Ga----G-GCCGCaGAUCg -5'
29483 3' -64.6 NC_006151.1 + 135579 0.7 0.325017
Target:  5'- uCCCGGaGGCGGaGUUcgUCCGGCGgCUcauaAGCc -3'
miRNA:   3'- -GGGCC-CCGCC-CGG--AGGCCGCaGA----UCG- -5'
29483 3' -64.6 NC_006151.1 + 135122 0.68 0.415684
Target:  5'- gCgCGGGGCGGGCUg--GGCGgggacgGGCa -3'
miRNA:   3'- -GgGCCCCGCCCGGaggCCGCaga---UCG- -5'
29483 3' -64.6 NC_006151.1 + 133650 0.66 0.566852
Target:  5'- gUCCGGGuGCGagaGGCgCUgCCGGCG-CggcGGCg -3'
miRNA:   3'- -GGGCCC-CGC---CCG-GA-GGCCGCaGa--UCG- -5'
29483 3' -64.6 NC_006151.1 + 133473 0.66 0.529463
Target:  5'- gCCCGcGaGGC-GGCCgCgGGCGUCaccuUGGCg -3'
miRNA:   3'- -GGGC-C-CCGcCCGGaGgCCGCAG----AUCG- -5'
29483 3' -64.6 NC_006151.1 + 133386 0.71 0.285513
Target:  5'- gCCGGGGCggcggccgGGGCCgagCgGGCgGUCUuGGCc -3'
miRNA:   3'- gGGCCCCG--------CCCGGa--GgCCG-CAGA-UCG- -5'
29483 3' -64.6 NC_006151.1 + 133164 0.66 0.520253
Target:  5'- gCgCGGGcGUGGGCCUCgGccacGCGUCccacGGCc -3'
miRNA:   3'- -GgGCCC-CGCCCGGAGgC----CGCAGa---UCG- -5'
29483 3' -64.6 NC_006151.1 + 131909 0.67 0.49033
Target:  5'- aCgGGGGCggcagcaGGGCCUCC-GCGgugcugccguagCUGGCc -3'
miRNA:   3'- gGgCCCCG-------CCCGGAGGcCGCa-----------GAUCG- -5'
29483 3' -64.6 NC_006151.1 + 131849 0.68 0.407555
Target:  5'- -gCGGGGCGGccgagacgcgcGCCggCGGCGUCgggucgcagGGCa -3'
miRNA:   3'- ggGCCCCGCC-----------CGGagGCCGCAGa--------UCG- -5'
29483 3' -64.6 NC_006151.1 + 130720 0.66 0.548057
Target:  5'- gCCCGGGggcccGCGcGGCCg-CGGCG-C-AGCg -3'
miRNA:   3'- -GGGCCC-----CGC-CCGGagGCCGCaGaUCG- -5'
29483 3' -64.6 NC_006151.1 + 130583 0.66 0.570631
Target:  5'- aUCUGGaGGUGGugcagcggcaccagcGCCUCCcaGGCGUcCUGGUc -3'
miRNA:   3'- -GGGCC-CCGCC---------------CGGAGG--CCGCA-GAUCG- -5'
29483 3' -64.6 NC_006151.1 + 128532 0.69 0.353534
Target:  5'- gCCCGaggccacGGCGGGCCcgCCGGCG-CgguGCc -3'
miRNA:   3'- -GGGCc------CCGCCCGGa-GGCCGCaGau-CG- -5'
29483 3' -64.6 NC_006151.1 + 128011 0.69 0.391599
Target:  5'- uCgCGGGGCGGcGgCgaCGGCGUCU-GCg -3'
miRNA:   3'- -GgGCCCCGCC-CgGagGCCGCAGAuCG- -5'
29483 3' -64.6 NC_006151.1 + 127544 0.66 0.529463
Target:  5'- gCCCagGGGGCGucgucgucguGGCCgccgCCGGCGcCUcGUu -3'
miRNA:   3'- -GGG--CCCCGC----------CCGGa---GGCCGCaGAuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.