miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29483 3' -64.6 NC_006151.1 + 46849 1.11 0.000375
Target:  5'- cCCCGGGGCGGGCCUCCGGCGUCUAGCu -3'
miRNA:   3'- -GGGCCCCGCCCGGAGGCCGCAGAUCG- -5'
29483 3' -64.6 NC_006151.1 + 59145 0.84 0.036057
Target:  5'- gCCCGcGGGCGGGUCcaggCCGGCGUCgcGCa -3'
miRNA:   3'- -GGGC-CCCGCCCGGa---GGCCGCAGauCG- -5'
29483 3' -64.6 NC_006151.1 + 100314 0.79 0.07905
Target:  5'- gCCCGGGGaggguGGGCCcugCCugggcacguGGCGUCUGGCg -3'
miRNA:   3'- -GGGCCCCg----CCCGGa--GG---------CCGCAGAUCG- -5'
29483 3' -64.6 NC_006151.1 + 114910 0.77 0.114604
Target:  5'- gCCCGGGcGCacGGCC-CCGGCGUCgcGCu -3'
miRNA:   3'- -GGGCCC-CGc-CCGGaGGCCGCAGauCG- -5'
29483 3' -64.6 NC_006151.1 + 79310 0.76 0.12947
Target:  5'- cCCCGGGaCGGGCCUccCCGGCGggacGGCc -3'
miRNA:   3'- -GGGCCCcGCCCGGA--GGCCGCaga-UCG- -5'
29483 3' -64.6 NC_006151.1 + 5871 0.76 0.13265
Target:  5'- gCCCGGGGCcgccggGGGCC-CCGGCcUCUGccGCu -3'
miRNA:   3'- -GGGCCCCG------CCCGGaGGCCGcAGAU--CG- -5'
29483 3' -64.6 NC_006151.1 + 18213 0.76 0.135902
Target:  5'- -gCGGGGCGGGCaUUCaacaGGCGgCUGGCg -3'
miRNA:   3'- ggGCCCCGCCCG-GAGg---CCGCaGAUCG- -5'
29483 3' -64.6 NC_006151.1 + 33892 0.76 0.139226
Target:  5'- cCCCgGGGGCGGgggccucgcGCCUCCG-CGUCcGGCg -3'
miRNA:   3'- -GGG-CCCCGCC---------CGGAGGCcGCAGaUCG- -5'
29483 3' -64.6 NC_006151.1 + 87336 0.76 0.142625
Target:  5'- uCCCGGGccugcCGGGCCUCCaGgGcCUGGCg -3'
miRNA:   3'- -GGGCCCc----GCCCGGAGGcCgCaGAUCG- -5'
29483 3' -64.6 NC_006151.1 + 109945 0.75 0.160784
Target:  5'- cCCCuGGGC-GGCCUCgGccGCGUCUGGCc -3'
miRNA:   3'- -GGGcCCCGcCCGGAGgC--CGCAGAUCG- -5'
29483 3' -64.6 NC_006151.1 + 53970 0.74 0.172657
Target:  5'- -gCGGcGGCGGcGCCUCCgcgGGCGUCgcGGCg -3'
miRNA:   3'- ggGCC-CCGCC-CGGAGG---CCGCAGa-UCG- -5'
29483 3' -64.6 NC_006151.1 + 2311 0.74 0.176368
Target:  5'- gCCCGGGGUcagcaccagcgggGcGGCCU-CGGCGUCgGGCu -3'
miRNA:   3'- -GGGCCCCG-------------C-CCGGAgGCCGCAGaUCG- -5'
29483 3' -64.6 NC_006151.1 + 10916 0.74 0.181001
Target:  5'- aCCGGGGuCGGGCC-CaCGGCGcCgagggugGGCg -3'
miRNA:   3'- gGGCCCC-GCCCGGaG-GCCGCaGa------UCG- -5'
29483 3' -64.6 NC_006151.1 + 2173 0.74 0.1897
Target:  5'- gCCGGGGCcGGCC-CCGGCGcCcgaGGCc -3'
miRNA:   3'- gGGCCCCGcCCGGaGGCCGCaGa--UCG- -5'
29483 3' -64.6 NC_006151.1 + 141379 0.74 0.193733
Target:  5'- aCgGGGGCGGGCC-CCGGgcaaacagcggcgUGUCcGGCg -3'
miRNA:   3'- gGgCCCCGCCCGGaGGCC-------------GCAGaUCG- -5'
29483 3' -64.6 NC_006151.1 + 10424 0.74 0.194186
Target:  5'- gCCGcGGGUGGGCCgaggCCGGCGgggAGg -3'
miRNA:   3'- gGGC-CCCGCCCGGa---GGCCGCagaUCg -5'
29483 3' -64.6 NC_006151.1 + 80698 0.74 0.194186
Target:  5'- gCCCGGcGCGGGCCUCacgaccuGGCGUUUAu- -3'
miRNA:   3'- -GGGCCcCGCCCGGAGg------CCGCAGAUcg -5'
29483 3' -64.6 NC_006151.1 + 3677 0.73 0.203437
Target:  5'- cCCCGGGGCggcGGGCC-CCgGGCGcgcGGCg -3'
miRNA:   3'- -GGGCCCCG---CCCGGaGG-CCGCagaUCG- -5'
29483 3' -64.6 NC_006151.1 + 21516 0.73 0.203437
Target:  5'- aCCGGGGCGGG-CUCgGGCuUCggccggGGCc -3'
miRNA:   3'- gGGCCCCGCCCgGAGgCCGcAGa-----UCG- -5'
29483 3' -64.6 NC_006151.1 + 20477 0.73 0.208205
Target:  5'- cCCCGGGG-GGGCgCgggggucgUCGGCGgcUCUGGCu -3'
miRNA:   3'- -GGGCCCCgCCCG-Ga-------GGCCGC--AGAUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.