miRNA display CGI


Results 21 - 40 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29483 3' -64.6 NC_006151.1 + 38123 0.73 0.218029
Target:  5'- cCCCGGGGCcGGCCcggCCGaGCGgc-GGCa -3'
miRNA:   3'- -GGGCCCCGcCCGGa--GGC-CGCagaUCG- -5'
29483 3' -64.6 NC_006151.1 + 35596 0.73 0.223088
Target:  5'- aCCUgGGGGCGGGCuCUCCucggGGCG-CUuauaAGCg -3'
miRNA:   3'- -GGG-CCCCGCCCG-GAGG----CCGCaGA----UCG- -5'
29483 3' -64.6 NC_006151.1 + 123773 0.73 0.223088
Target:  5'- cCCCGGGGgcaucggccCGGGCaccaCGGCGgugCUGGCc -3'
miRNA:   3'- -GGGCCCC---------GCCCGgag-GCCGCa--GAUCG- -5'
29483 3' -64.6 NC_006151.1 + 14266 0.72 0.238867
Target:  5'- gUCGGGGUGGGCCgggagUgGGCGU--GGCa -3'
miRNA:   3'- gGGCCCCGCCCGGa----GgCCGCAgaUCG- -5'
29483 3' -64.6 NC_006151.1 + 139616 0.72 0.238867
Target:  5'- gUCCGGGcGCggcuggGGGCCaUCCGGCG-CcGGCg -3'
miRNA:   3'- -GGGCCC-CG------CCCGG-AGGCCGCaGaUCG- -5'
29483 3' -64.6 NC_006151.1 + 82138 0.72 0.24433
Target:  5'- gCCCGcGGGCGGGCCcggCGGCuccagGUCcgAGCc -3'
miRNA:   3'- -GGGC-CCCGCCCGGag-GCCG-----CAGa-UCG- -5'
29483 3' -64.6 NC_006151.1 + 18770 0.72 0.24433
Target:  5'- gCCCGGGGCccGGGCCgg-GGCcGUC-AGCu -3'
miRNA:   3'- -GGGCCCCG--CCCGGaggCCG-CAGaUCG- -5'
29483 3' -64.6 NC_006151.1 + 13023 0.72 0.24433
Target:  5'- cCUCGGGGCGcGGCCgacCCGGCGg----- -3'
miRNA:   3'- -GGGCCCCGC-CCGGa--GGCCGCagaucg -5'
29483 3' -64.6 NC_006151.1 + 57514 0.72 0.249897
Target:  5'- gCCgCGGcGGCGGcggccGCCUCCGGCG-CggccgcgGGCa -3'
miRNA:   3'- -GG-GCC-CCGCC-----CGGAGGCCGCaGa------UCG- -5'
29483 3' -64.6 NC_006151.1 + 31750 0.72 0.255568
Target:  5'- gCCGGGGaCGcGCCUgCGGCGgcgGGCg -3'
miRNA:   3'- gGGCCCC-GCcCGGAgGCCGCagaUCG- -5'
29483 3' -64.6 NC_006151.1 + 18419 0.72 0.255568
Target:  5'- gCCGGGGgaggaGGGCCgCCGGCG---GGCg -3'
miRNA:   3'- gGGCCCCg----CCCGGaGGCCGCagaUCG- -5'
29483 3' -64.6 NC_006151.1 + 78338 0.72 0.261344
Target:  5'- cCCCGGGGCGGGCg-CgGGCGa----- -3'
miRNA:   3'- -GGGCCCCGCCCGgaGgCCGCagaucg -5'
29483 3' -64.6 NC_006151.1 + 49045 0.71 0.273215
Target:  5'- gCCCacGGGCuGGCCUUCaGCGUCcGGCg -3'
miRNA:   3'- -GGGc-CCCGcCCGGAGGcCGCAGaUCG- -5'
29483 3' -64.6 NC_006151.1 + 46722 0.71 0.273215
Target:  5'- cUCgGGGGCcgGGGCCggcCCGGgGUC-GGCg -3'
miRNA:   3'- -GGgCCCCG--CCCGGa--GGCCgCAGaUCG- -5'
29483 3' -64.6 NC_006151.1 + 21550 0.71 0.27931
Target:  5'- gCCGGGGCcuGGGCCUC-GGCG---AGCc -3'
miRNA:   3'- gGGCCCCG--CCCGGAGgCCGCagaUCG- -5'
29483 3' -64.6 NC_006151.1 + 133386 0.71 0.285513
Target:  5'- gCCGGGGCggcggccgGGGCCgagCgGGCgGUCUuGGCc -3'
miRNA:   3'- gGGCCCCG--------CCCGGa--GgCCG-CAGA-UCG- -5'
29483 3' -64.6 NC_006151.1 + 17105 0.71 0.285513
Target:  5'- gUCGGGGCgccgGGGgCUCCGGCGgcggugCU-GCg -3'
miRNA:   3'- gGGCCCCG----CCCgGAGGCCGCa-----GAuCG- -5'
29483 3' -64.6 NC_006151.1 + 3722 0.71 0.291825
Target:  5'- gCUCGGGcGCuGGGuCCgggCCGGCGgcgggggagCUGGCg -3'
miRNA:   3'- -GGGCCC-CG-CCC-GGa--GGCCGCa--------GAUCG- -5'
29483 3' -64.6 NC_006151.1 + 40090 0.71 0.304774
Target:  5'- gCCGGGGCcGGCC-CCGGCGa----- -3'
miRNA:   3'- gGGCCCCGcCCGGaGGCCGCagaucg -5'
29483 3' -64.6 NC_006151.1 + 38597 0.7 0.314098
Target:  5'- cCCCGGGGaCggcgaggaggacgagGGGCuCUCCGGCG-C-GGCc -3'
miRNA:   3'- -GGGCCCC-G---------------CCCG-GAGGCCGCaGaUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.