miRNA display CGI


Results 41 - 60 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29484 3' -60.7 NC_006151.1 + 29151 0.66 0.70791
Target:  5'- cGCGCGUGACCc--GCCGcgaccuCUCCCUu -3'
miRNA:   3'- uCGCGCACUGGcucCGGUac----GAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 31203 0.66 0.717602
Target:  5'- --aGUGUGGCCcgcguccAGGCCggGC-CCCCg -3'
miRNA:   3'- ucgCGCACUGGc------UCCGGuaCGaGGGG- -5'
29484 3' -60.7 NC_006151.1 + 31256 0.68 0.579285
Target:  5'- gGGCGgGcGAgCCGGGGCCcccggcccGCUCCaCCg -3'
miRNA:   3'- -UCGCgCaCU-GGCUCCGGua------CGAGG-GG- -5'
29484 3' -60.7 NC_006151.1 + 31773 0.66 0.698156
Target:  5'- gGGCGCGc-GCCG-GGCg--GCUCUCCu -3'
miRNA:   3'- -UCGCGCacUGGCuCCGguaCGAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 33267 0.68 0.56945
Target:  5'- gGGCG-GUGGCgGcGGCCAUcGCccgacccuUCCCCg -3'
miRNA:   3'- -UCGCgCACUGgCuCCGGUA-CG--------AGGGG- -5'
29484 3' -60.7 NC_006151.1 + 33924 0.73 0.326388
Target:  5'- cGGCGgGcgGAUCGAGGCCcgcGCgCCCCg -3'
miRNA:   3'- -UCGCgCa-CUGGCUCCGGua-CGaGGGG- -5'
29484 3' -60.7 NC_006151.1 + 34014 0.66 0.698156
Target:  5'- cGGCGCGccGGCCc-GGCC---CUCCCCg -3'
miRNA:   3'- -UCGCGCa-CUGGcuCCGGuacGAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 36373 0.71 0.38772
Target:  5'- cGCaGCGgcagaGGCCGGGGCCcccgGCggCCCCg -3'
miRNA:   3'- uCG-CGCa----CUGGCUCCGGua--CGa-GGGG- -5'
29484 3' -60.7 NC_006151.1 + 36576 0.67 0.618919
Target:  5'- cAGCGcCGgcacGGCgGGGGCCc-GCUuCCCCa -3'
miRNA:   3'- -UCGC-GCa---CUGgCUCCGGuaCGA-GGGG- -5'
29484 3' -60.7 NC_006151.1 + 37318 0.66 0.717602
Target:  5'- gGGCcccCGccGACCGAcgGGCCGcUGCUCaCCCc -3'
miRNA:   3'- -UCGc--GCa-CUGGCU--CCGGU-ACGAG-GGG- -5'
29484 3' -60.7 NC_006151.1 + 38269 0.75 0.24267
Target:  5'- cGGCcaaCGUGGCCGcGGCCcgGCUCgCCg -3'
miRNA:   3'- -UCGc--GCACUGGCuCCGGuaCGAGgGG- -5'
29484 3' -60.7 NC_006151.1 + 38577 0.69 0.530584
Target:  5'- cGCGCGc--CCGGGGCCc-GCcgCCCCg -3'
miRNA:   3'- uCGCGCacuGGCUCCGGuaCGa-GGGG- -5'
29484 3' -60.7 NC_006151.1 + 39469 0.66 0.717602
Target:  5'- cGUGCGcUGGcCCGGGuGCCGcgaGCUCCgCg -3'
miRNA:   3'- uCGCGC-ACU-GGCUC-CGGUa--CGAGGgG- -5'
29484 3' -60.7 NC_006151.1 + 39672 0.71 0.404193
Target:  5'- cGCGCGccuACCGccaGCgCGUGCUCCCCa -3'
miRNA:   3'- uCGCGCac-UGGCuc-CG-GUACGAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 39791 0.69 0.51151
Target:  5'- cGCGCGgccaACCGcuggGGGCUcgGCgCCCCg -3'
miRNA:   3'- uCGCGCac--UGGC----UCCGGuaCGaGGGG- -5'
29484 3' -60.7 NC_006151.1 + 39928 0.69 0.540218
Target:  5'- gAGCcCGacGCCGAGGCCGccccgcuggUGCUgaCCCCg -3'
miRNA:   3'- -UCGcGCacUGGCUCCGGU---------ACGA--GGGG- -5'
29484 3' -60.7 NC_006151.1 + 44929 0.69 0.537322
Target:  5'- uGCGCGUaaaGugCGAGGCCcacucgacccccccgGCUCgCCu -3'
miRNA:   3'- uCGCGCA---CugGCUCCGGua-------------CGAGgGG- -5'
29484 3' -60.7 NC_006151.1 + 46285 1.11 0.000685
Target:  5'- cAGCGCGUGACCGAGGCCAUGCUCCCCa -3'
miRNA:   3'- -UCGCGCACUGGCUCCGGUACGAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 46541 0.73 0.305319
Target:  5'- -cCGCGgacGACCaGAGGCCGgcgcccaggcGCUCCCCg -3'
miRNA:   3'- ucGCGCa--CUGG-CUCCGGUa---------CGAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 47431 0.67 0.63882
Target:  5'- gAGUGCccaACCGGGGCCcgGCgguuacaucacCCCCa -3'
miRNA:   3'- -UCGCGcacUGGCUCCGGuaCGa----------GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.