miRNA display CGI


Results 21 - 40 of 172 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29484 3' -60.7 NC_006151.1 + 13026 0.69 0.50208
Target:  5'- cGGgGCGcGGCCGAcccGGCgGUGacccaUCCCCa -3'
miRNA:   3'- -UCgCGCaCUGGCU---CCGgUACg----AGGGG- -5'
29484 3' -60.7 NC_006151.1 + 13984 0.68 0.559657
Target:  5'- gGGCccGCGUccCCGGGGCCcacGUGUgaggCCCCg -3'
miRNA:   3'- -UCG--CGCAcuGGCUCCGG---UACGa---GGGG- -5'
29484 3' -60.7 NC_006151.1 + 14064 0.67 0.628868
Target:  5'- gGGUGCGUGGCgGcccGGCCGacgGCacucgccgCCCCa -3'
miRNA:   3'- -UCGCGCACUGgCu--CCGGUa--CGa-------GGGG- -5'
29484 3' -60.7 NC_006151.1 + 17175 0.73 0.311529
Target:  5'- cGGCGCccaggauccacagGUgGAUCGGGGCCGUGCcccgggCCCCc -3'
miRNA:   3'- -UCGCG-------------CA-CUGGCUCCGGUACGa-----GGGG- -5'
29484 3' -60.7 NC_006151.1 + 17402 0.68 0.598065
Target:  5'- gGGCGCGUGGCgCGcggcagcaGGGCCA-GCgagccgggggcgaUCUCCg -3'
miRNA:   3'- -UCGCGCACUG-GC--------UCCGGUaCG-------------AGGGG- -5'
29484 3' -60.7 NC_006151.1 + 18775 0.74 0.272553
Target:  5'- gGGCcCG-GGCCGGGGCCGUcaGCUCCUUg -3'
miRNA:   3'- -UCGcGCaCUGGCUCCGGUA--CGAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 18853 0.67 0.6587
Target:  5'- uGGCGaCGUGGCCGuuguGGGUCAUcacgaGCacguacagCCCCg -3'
miRNA:   3'- -UCGC-GCACUGGC----UCCGGUA-----CGa-------GGGG- -5'
29484 3' -60.7 NC_006151.1 + 19280 0.68 0.599056
Target:  5'- cGCGCGgggcccACCGGGGCCAgcgGCgcgggcggccggUCgCCCa -3'
miRNA:   3'- uCGCGCac----UGGCUCCGGUa--CG------------AG-GGG- -5'
29484 3' -60.7 NC_006151.1 + 20155 0.7 0.474266
Target:  5'- cGGCGCGUgGACCGccGGGCC--GCgCCCg -3'
miRNA:   3'- -UCGCGCA-CUGGC--UCCGGuaCGaGGGg -5'
29484 3' -60.7 NC_006151.1 + 21536 0.67 0.6587
Target:  5'- cGGC-CGgGGCCGGGGCCGggGCcugggCCUCg -3'
miRNA:   3'- -UCGcGCaCUGGCUCCGGUa-CGa----GGGG- -5'
29484 3' -60.7 NC_006151.1 + 22790 0.69 0.50208
Target:  5'- cGCGCacGUG-CUG-GGCCGU-CUCCCCg -3'
miRNA:   3'- uCGCG--CACuGGCuCCGGUAcGAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 23460 0.66 0.6785
Target:  5'- gGGCGgGUGAUCGuGaGcCCGUGCUUCaugCCg -3'
miRNA:   3'- -UCGCgCACUGGCuC-C-GGUACGAGG---GG- -5'
29484 3' -60.7 NC_006151.1 + 24323 0.66 0.717602
Target:  5'- gGGCGCG-GA-UGAGGUCGaucaggUGCaucUCCCCg -3'
miRNA:   3'- -UCGCGCaCUgGCUCCGGU------ACG---AGGGG- -5'
29484 3' -60.7 NC_006151.1 + 24736 0.66 0.668615
Target:  5'- aAGUGCGgcagGACC-AGGCaCGUcGCcgggCCCCg -3'
miRNA:   3'- -UCGCGCa---CUGGcUCCG-GUA-CGa---GGGG- -5'
29484 3' -60.7 NC_006151.1 + 27304 0.75 0.248421
Target:  5'- gGGgGCGUGGgggUCGAGGCgGgggacggggggcUGCUCCCCg -3'
miRNA:   3'- -UCgCGCACU---GGCUCCGgU------------ACGAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 27562 0.69 0.524834
Target:  5'- uGgGCuggGACgGGGGCCGggugggugggcgagGCUCCCCg -3'
miRNA:   3'- uCgCGca-CUGgCUCCGGUa-------------CGAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 28187 0.66 0.6785
Target:  5'- gAGUGcCGUcGGCCGGGccGCCAcGCaCCCCu -3'
miRNA:   3'- -UCGC-GCA-CUGGCUC--CGGUaCGaGGGG- -5'
29484 3' -60.7 NC_006151.1 + 28276 0.69 0.540218
Target:  5'- gGGCccCGggGACgCG-GGCCcgGCUCCCCc -3'
miRNA:   3'- -UCGc-GCa-CUG-GCuCCGGuaCGAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 28312 0.72 0.333647
Target:  5'- cGGCGCGUccCCGGGGCgCccGC-CCCCg -3'
miRNA:   3'- -UCGCGCAcuGGCUCCG-GuaCGaGGGG- -5'
29484 3' -60.7 NC_006151.1 + 28833 0.7 0.474266
Target:  5'- uGCGgGccccgggGACgCG-GGCCcgGCUCCCCc -3'
miRNA:   3'- uCGCgCa------CUG-GCuCCGGuaCGAGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.