miRNA display CGI


Results 21 - 40 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29484 3' -60.7 NC_006151.1 + 28312 0.72 0.333647
Target:  5'- cGGCGCGUccCCGGGGCgCccGC-CCCCg -3'
miRNA:   3'- -UCGCGCAcuGGCUCCG-GuaCGaGGGG- -5'
29484 3' -60.7 NC_006151.1 + 53490 0.72 0.356127
Target:  5'- gAGC-CGUGGCaCGcgaAGGCCAggUGCUCCgCCg -3'
miRNA:   3'- -UCGcGCACUG-GC---UCCGGU--ACGAGG-GG- -5'
29484 3' -60.7 NC_006151.1 + 84175 0.71 0.379651
Target:  5'- cGGCGCGccuccucGCCGccGCCGUGC-CCCCg -3'
miRNA:   3'- -UCGCGCac-----UGGCucCGGUACGaGGGG- -5'
29484 3' -60.7 NC_006151.1 + 3614 0.71 0.379651
Target:  5'- cGCG-GUGGCCGuGGCCG---UCCCCg -3'
miRNA:   3'- uCGCgCACUGGCuCCGGUacgAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 36373 0.71 0.38772
Target:  5'- cGCaGCGgcagaGGCCGGGGCCcccgGCggCCCCg -3'
miRNA:   3'- uCG-CGCa----CUGGCUCCGGua--CGa-GGGG- -5'
29484 3' -60.7 NC_006151.1 + 71091 0.71 0.38772
Target:  5'- cGGCGCcgcgGGCgCGGGcGCCGUGCgcuaCCCCu -3'
miRNA:   3'- -UCGCGca--CUG-GCUC-CGGUACGa---GGGG- -5'
29484 3' -60.7 NC_006151.1 + 656 0.71 0.395901
Target:  5'- cGGgGCGcGGCCGGGGCgG-GCUCCgCg -3'
miRNA:   3'- -UCgCGCaCUGGCUCCGgUaCGAGGgG- -5'
29484 3' -60.7 NC_006151.1 + 135809 0.71 0.395901
Target:  5'- gAGCGC---GCCGAGGCCGaGCUuuuagcgcgccgCCCCg -3'
miRNA:   3'- -UCGCGcacUGGCUCCGGUaCGA------------GGGG- -5'
29484 3' -60.7 NC_006151.1 + 10908 0.71 0.395901
Target:  5'- cGGCGCG-GACCGGGGUCggGC-CCa- -3'
miRNA:   3'- -UCGCGCaCUGGCUCCGGuaCGaGGgg -5'
29484 3' -60.7 NC_006151.1 + 92143 0.71 0.399205
Target:  5'- cGCGCGgcgccaaggccaucaUGGCCGcGGCCGUGCgCgCCg -3'
miRNA:   3'- uCGCGC---------------ACUGGCuCCGGUACGaGgGG- -5'
29484 3' -60.7 NC_006151.1 + 118174 0.71 0.404193
Target:  5'- uGCGCGgccUGACCgucGAGGCCG-GCUUCgCCg -3'
miRNA:   3'- uCGCGC---ACUGG---CUCCGGUaCGAGG-GG- -5'
29484 3' -60.7 NC_006151.1 + 39672 0.71 0.404193
Target:  5'- cGCGCGccuACCGccaGCgCGUGCUCCCCa -3'
miRNA:   3'- uCGCGCac-UGGCuc-CG-GUACGAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 58853 0.71 0.40754
Target:  5'- cAGCGCGUGgagcucgcccggcgcGCCGgguccguccAGGCCGUGUagaUCCCg -3'
miRNA:   3'- -UCGCGCAC---------------UGGC---------UCCGGUACG---AGGGg -5'
29484 3' -60.7 NC_006151.1 + 79104 0.71 0.412594
Target:  5'- gAGCGCcccuccgucGUGGCUG-GGCCAcgGCcgCCCCa -3'
miRNA:   3'- -UCGCG---------CACUGGCuCCGGUa-CGa-GGGG- -5'
29484 3' -60.7 NC_006151.1 + 84314 0.71 0.412594
Target:  5'- gAGCGCGaUGGCCGcGaCCGUGCgcggCCUCg -3'
miRNA:   3'- -UCGCGC-ACUGGCuCcGGUACGa---GGGG- -5'
29484 3' -60.7 NC_006151.1 + 78167 0.71 0.421101
Target:  5'- cGC-CGUGGUCGAGGCCGUG-UCCgCCg -3'
miRNA:   3'- uCGcGCACUGGCUCCGGUACgAGG-GG- -5'
29484 3' -60.7 NC_006151.1 + 73966 0.71 0.421101
Target:  5'- -cCGCGUGgccACCGuGGCCAUGC-CCgCg -3'
miRNA:   3'- ucGCGCAC---UGGCuCCGGUACGaGGgG- -5'
29484 3' -60.7 NC_006151.1 + 61476 0.71 0.421101
Target:  5'- cGCGCaacGCCGAGGCCGUgagcuggcGCUCCUg -3'
miRNA:   3'- uCGCGcacUGGCUCCGGUA--------CGAGGGg -5'
29484 3' -60.7 NC_006151.1 + 132853 0.71 0.429714
Target:  5'- cGgGCGgccgGcCCGGGGCCGcGCcCCCCa -3'
miRNA:   3'- uCgCGCa---CuGGCUCCGGUaCGaGGGG- -5'
29484 3' -60.7 NC_006151.1 + 86297 0.71 0.429714
Target:  5'- cGGCGuCGUcaacuGCCcgcagcugGGGGCCGUGCUCgCCCg -3'
miRNA:   3'- -UCGC-GCAc----UGG--------CUCCGGUACGAG-GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.