Results 21 - 40 of 172 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29484 | 3' | -60.7 | NC_006151.1 | + | 64371 | 0.66 | 0.717602 |
Target: 5'- cAGCGCacGGUCGAGGCCGUgGCcagCCCg -3' miRNA: 3'- -UCGCGcaCUGGCUCCGGUA-CGa--GGGg -5' |
|||||||
29484 | 3' | -60.7 | NC_006151.1 | + | 24323 | 0.66 | 0.717602 |
Target: 5'- gGGCGCG-GA-UGAGGUCGaucaggUGCaucUCCCCg -3' miRNA: 3'- -UCGCGCaCUgGCUCCGGU------ACG---AGGGG- -5' |
|||||||
29484 | 3' | -60.7 | NC_006151.1 | + | 123065 | 0.66 | 0.717602 |
Target: 5'- uGCGCGacGCCGAGcGCCGgcgGCgCCUg -3' miRNA: 3'- uCGCGCacUGGCUC-CGGUa--CGaGGGg -5' |
|||||||
29484 | 3' | -60.7 | NC_006151.1 | + | 39469 | 0.66 | 0.717602 |
Target: 5'- cGUGCGcUGGcCCGGGuGCCGcgaGCUCCgCg -3' miRNA: 3'- uCGCGC-ACU-GGCUC-CGGUa--CGAGGgG- -5' |
|||||||
29484 | 3' | -60.7 | NC_006151.1 | + | 31203 | 0.66 | 0.717602 |
Target: 5'- --aGUGUGGCCcgcguccAGGCCggGC-CCCCg -3' miRNA: 3'- ucgCGCACUGGc------UCCGGuaCGaGGGG- -5' |
|||||||
29484 | 3' | -60.7 | NC_006151.1 | + | 101777 | 0.66 | 0.711794 |
Target: 5'- cGCGgGgccCCGGGGCCAUcccguccucgccgucGC-CCCCg -3' miRNA: 3'- uCGCgCacuGGCUCCGGUA---------------CGaGGGG- -5' |
|||||||
29484 | 3' | -60.7 | NC_006151.1 | + | 99252 | 0.66 | 0.70791 |
Target: 5'- aGGCGCucGUGACCGcGGGCUucacGCgCCgCCa -3' miRNA: 3'- -UCGCG--CACUGGC-UCCGGua--CGaGG-GG- -5' |
|||||||
29484 | 3' | -60.7 | NC_006151.1 | + | 57590 | 0.66 | 0.70791 |
Target: 5'- aGGCGCacGUGACC-AGGCCGg---CCUCg -3' miRNA: 3'- -UCGCG--CACUGGcUCCGGUacgaGGGG- -5' |
|||||||
29484 | 3' | -60.7 | NC_006151.1 | + | 122244 | 0.66 | 0.698156 |
Target: 5'- uGUGCGUGACggccaaccagggCGAGGCCAcgcacaggcgccUGCUCg-- -3' miRNA: 3'- uCGCGCACUG------------GCUCCGGU------------ACGAGggg -5' |
|||||||
29484 | 3' | -60.7 | NC_006151.1 | + | 74015 | 0.66 | 0.698156 |
Target: 5'- aGGgGCGUcGugCGcucGGCCAUGUUCgUCa -3' miRNA: 3'- -UCgCGCA-CugGCu--CCGGUACGAGgGG- -5' |
|||||||
29484 | 3' | -60.7 | NC_006151.1 | + | 117510 | 0.66 | 0.698156 |
Target: 5'- aAGCGCG-GACUcacGGGCCGcucggggGC-CCCCu -3' miRNA: 3'- -UCGCGCaCUGGc--UCCGGUa------CGaGGGG- -5' |
|||||||
29484 | 3' | -60.7 | NC_006151.1 | + | 2536 | 0.66 | 0.70791 |
Target: 5'- gAGCGCG-GAgCGcuggcGGGCCAUG-UCCUUg -3' miRNA: 3'- -UCGCGCaCUgGC-----UCCGGUACgAGGGG- -5' |
|||||||
29484 | 3' | -60.7 | NC_006151.1 | + | 8239 | 0.66 | 0.70791 |
Target: 5'- cGGCGgGgagGGCCG-GGCCGgcGCgccgggacgCCCCu -3' miRNA: 3'- -UCGCgCa--CUGGCuCCGGUa-CGa--------GGGG- -5' |
|||||||
29484 | 3' | -60.7 | NC_006151.1 | + | 29151 | 0.66 | 0.70791 |
Target: 5'- cGCGCGUGACCc--GCCGcgaccuCUCCCUu -3' miRNA: 3'- uCGCGCACUGGcucCGGUac----GAGGGG- -5' |
|||||||
29484 | 3' | -60.7 | NC_006151.1 | + | 57537 | 0.66 | 0.70791 |
Target: 5'- cGGCGCGgccgcgGGCaCGucGCCGaGCacgCCCCa -3' miRNA: 3'- -UCGCGCa-----CUG-GCucCGGUaCGa--GGGG- -5' |
|||||||
29484 | 3' | -60.7 | NC_006151.1 | + | 10571 | 0.67 | 0.6587 |
Target: 5'- uGGCGCGgccGGCuCGGcGGCCcgGCccuUCCuCCg -3' miRNA: 3'- -UCGCGCa--CUG-GCU-CCGGuaCG---AGG-GG- -5' |
|||||||
29484 | 3' | -60.7 | NC_006151.1 | + | 66587 | 0.67 | 0.6587 |
Target: 5'- cGCGCGcGGCCGAGGCgCucgaCUUCgCCg -3' miRNA: 3'- uCGCGCaCUGGCUCCG-Guac-GAGG-GG- -5' |
|||||||
29484 | 3' | -60.7 | NC_006151.1 | + | 137915 | 0.67 | 0.6587 |
Target: 5'- cGGCgGCGgcuGCCacGGGcGCC-UGCUCCCCu -3' miRNA: 3'- -UCG-CGCac-UGG--CUC-CGGuACGAGGGG- -5' |
|||||||
29484 | 3' | -60.7 | NC_006151.1 | + | 21536 | 0.67 | 0.6587 |
Target: 5'- cGGC-CGgGGCCGGGGCCGggGCcugggCCUCg -3' miRNA: 3'- -UCGcGCaCUGGCUCCGGUa-CGa----GGGG- -5' |
|||||||
29484 | 3' | -60.7 | NC_006151.1 | + | 18853 | 0.67 | 0.6587 |
Target: 5'- uGGCGaCGUGGCCGuuguGGGUCAUcacgaGCacguacagCCCCg -3' miRNA: 3'- -UCGC-GCACUGGC----UCCGGUA-----CGa-------GGGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home