miRNA display CGI


Results 1 - 20 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29484 3' -60.7 NC_006151.1 + 46285 1.11 0.000685
Target:  5'- cAGCGCGUGACCGAGGCCAUGCUCCCCa -3'
miRNA:   3'- -UCGCGCACUGGCUCCGGUACGAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 115446 0.82 0.08537
Target:  5'- cGCGCGUGAUgcgCGcGGCCAUgaGCUCCCCg -3'
miRNA:   3'- uCGCGCACUG---GCuCCGGUA--CGAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 84719 0.79 0.128524
Target:  5'- gAGCGCGUGGCCGAGGCgcuCGUGgUgCUCg -3'
miRNA:   3'- -UCGCGCACUGGCUCCG---GUACgAgGGG- -5'
29484 3' -60.7 NC_006151.1 + 102117 0.76 0.195787
Target:  5'- uGCGCG-GGCCGGaGCC-UGUUCCCCg -3'
miRNA:   3'- uCGCGCaCUGGCUcCGGuACGAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 113602 0.76 0.200578
Target:  5'- uGCGcCGUGGCCGAGcGCCAgGCggaCCCg -3'
miRNA:   3'- uCGC-GCACUGGCUC-CGGUaCGag-GGG- -5'
29484 3' -60.7 NC_006151.1 + 7159 0.76 0.212493
Target:  5'- cGCGCG-GGCgCGAGGCgCAUGCUcggcacgcgacccacCCCCg -3'
miRNA:   3'- uCGCGCaCUG-GCUCCG-GUACGA---------------GGGG- -5'
29484 3' -60.7 NC_006151.1 + 113698 0.75 0.237031
Target:  5'- gGGCGCGUGugCGGGgaGCUGUGgaCCCUg -3'
miRNA:   3'- -UCGCGCACugGCUC--CGGUACgaGGGG- -5'
29484 3' -60.7 NC_006151.1 + 38269 0.75 0.24267
Target:  5'- cGGCcaaCGUGGCCGcGGCCcgGCUCgCCg -3'
miRNA:   3'- -UCGc--GCACUGGCuCCGGuaCGAGgGG- -5'
29484 3' -60.7 NC_006151.1 + 27304 0.75 0.248421
Target:  5'- gGGgGCGUGGgggUCGAGGCgGgggacggggggcUGCUCCCCg -3'
miRNA:   3'- -UCgCGCACU---GGCUCCGgU------------ACGAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 135501 0.74 0.260259
Target:  5'- cGCGCGgccucGGCCGAGGCCAUcacgUCCUCg -3'
miRNA:   3'- uCGCGCa----CUGGCUCCGGUAcg--AGGGG- -5'
29484 3' -60.7 NC_006151.1 + 4884 0.74 0.271928
Target:  5'- cGGC-CGUcGGCCGgagggucggagccGGGCCAggGCUCCCCg -3'
miRNA:   3'- -UCGcGCA-CUGGC-------------UCCGGUa-CGAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 18775 0.74 0.272553
Target:  5'- gGGCcCG-GGCCGGGGCCGUcaGCUCCUUg -3'
miRNA:   3'- -UCGcGCaCUGGCUCCGGUA--CGAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 84473 0.74 0.278236
Target:  5'- cGCGCGUGGuucgccuUCGAGGCCGcUGCgaUCCCg -3'
miRNA:   3'- uCGCGCACU-------GGCUCCGGU-ACG--AGGGg -5'
29484 3' -60.7 NC_006151.1 + 94664 0.74 0.285309
Target:  5'- cAGCGgGUGcCCGGcGGgCA-GCUCCCCg -3'
miRNA:   3'- -UCGCgCACuGGCU-CCgGUaCGAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 117550 0.73 0.291862
Target:  5'- cGGCGaCGc-GCCGcGGCCAgaaggGCUCCCCg -3'
miRNA:   3'- -UCGC-GCacUGGCuCCGGUa----CGAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 46541 0.73 0.305319
Target:  5'- -cCGCGgacGACCaGAGGCCGgcgcccaggcGCUCCCCg -3'
miRNA:   3'- ucGCGCa--CUGG-CUCCGGUa---------CGAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 17175 0.73 0.311529
Target:  5'- cGGCGCccaggauccacagGUgGAUCGGGGCCGUGCcccgggCCCCc -3'
miRNA:   3'- -UCGCG-------------CA-CUGGCUCCGGUACGa-----GGGG- -5'
29484 3' -60.7 NC_006151.1 + 33924 0.73 0.326388
Target:  5'- cGGCGgGcgGAUCGAGGCCcgcGCgCCCCg -3'
miRNA:   3'- -UCGCgCa-CUGGCUCCGGua-CGaGGGG- -5'
29484 3' -60.7 NC_006151.1 + 86170 0.72 0.333647
Target:  5'- cGCGCGaGAUCGuGGCCGccgcgcUGC-CCCCg -3'
miRNA:   3'- uCGCGCaCUGGCuCCGGU------ACGaGGGG- -5'
29484 3' -60.7 NC_006151.1 + 48922 0.72 0.333647
Target:  5'- cGCuGCcUGACCGAGGagGUGCUgCCCg -3'
miRNA:   3'- uCG-CGcACUGGCUCCggUACGAgGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.