miRNA display CGI


Results 1 - 20 of 172 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29484 3' -60.7 NC_006151.1 + 656 0.71 0.395901
Target:  5'- cGGgGCGcGGCCGGGGCgG-GCUCCgCg -3'
miRNA:   3'- -UCgCGCaCUGGCUCCGgUaCGAGGgG- -5'
29484 3' -60.7 NC_006151.1 + 2536 0.66 0.70791
Target:  5'- gAGCGCG-GAgCGcuggcGGGCCAUG-UCCUUg -3'
miRNA:   3'- -UCGCGCaCUgGC-----UCCGGUACgAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 2604 0.69 0.50208
Target:  5'- cGCGCGgcggcagcggGACCGGGGUCcgGggCCCg -3'
miRNA:   3'- uCGCGCa---------CUGGCUCCGGuaCgaGGGg -5'
29484 3' -60.7 NC_006151.1 + 3577 0.68 0.579285
Target:  5'- cGGCGCuUGcGCCGGGGCCcccGgUCCUCu -3'
miRNA:   3'- -UCGCGcAC-UGGCUCCGGua-CgAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 3614 0.71 0.379651
Target:  5'- cGCG-GUGGCCGuGGCCG---UCCCCg -3'
miRNA:   3'- uCGCgCACUGGCuCCGGUacgAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 3894 0.69 0.530584
Target:  5'- cGGCGCuggGACgaCGAGGCCggGCUgCUCg -3'
miRNA:   3'- -UCGCGca-CUG--GCUCCGGuaCGAgGGG- -5'
29484 3' -60.7 NC_006151.1 + 3945 0.67 0.628868
Target:  5'- gGGCGCGggcuccgcgGGCCcGGGCCGcGCggcggCCUCg -3'
miRNA:   3'- -UCGCGCa--------CUGGcUCCGGUaCGa----GGGG- -5'
29484 3' -60.7 NC_006151.1 + 4602 0.69 0.51151
Target:  5'- gAGC-CGUGGCCGugGGGCgCGUGgaCCCg -3'
miRNA:   3'- -UCGcGCACUGGC--UCCG-GUACgaGGGg -5'
29484 3' -60.7 NC_006151.1 + 4884 0.74 0.271928
Target:  5'- cGGC-CGUcGGCCGgagggucggagccGGGCCAggGCUCCCCg -3'
miRNA:   3'- -UCGcGCA-CUGGC-------------UCCGGUa-CGAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 5007 0.66 0.6785
Target:  5'- uGCGCGggGGCCG-GGCgG-GCUCCg- -3'
miRNA:   3'- uCGCGCa-CUGGCuCCGgUaCGAGGgg -5'
29484 3' -60.7 NC_006151.1 + 5731 0.66 0.6785
Target:  5'- uGGCGCcggGGuCCGAGGCCGcGC-CgCCg -3'
miRNA:   3'- -UCGCGca-CU-GGCUCCGGUaCGaGgGG- -5'
29484 3' -60.7 NC_006151.1 + 7159 0.76 0.212493
Target:  5'- cGCGCG-GGCgCGAGGCgCAUGCUcggcacgcgacccacCCCCg -3'
miRNA:   3'- uCGCGCaCUG-GCUCCG-GUACGA---------------GGGG- -5'
29484 3' -60.7 NC_006151.1 + 8239 0.66 0.70791
Target:  5'- cGGCGgGgagGGCCG-GGCCGgcGCgccgggacgCCCCu -3'
miRNA:   3'- -UCGCgCa--CUGGCuCCGGUa-CGa--------GGGG- -5'
29484 3' -60.7 NC_006151.1 + 8356 0.68 0.589156
Target:  5'- cGGaCGCGgaGGCgCGAGGCCcccGC-CCCCg -3'
miRNA:   3'- -UC-GCGCa-CUG-GCUCCGGua-CGaGGGG- -5'
29484 3' -60.7 NC_006151.1 + 8824 0.7 0.474266
Target:  5'- cGCGUGUGugCGcGcGCCu--CUCCCCg -3'
miRNA:   3'- uCGCGCACugGCuC-CGGuacGAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 10571 0.67 0.6587
Target:  5'- uGGCGCGgccGGCuCGGcGGCCcgGCccuUCCuCCg -3'
miRNA:   3'- -UCGCGCa--CUG-GCU-CCGGuaCG---AGG-GG- -5'
29484 3' -60.7 NC_006151.1 + 10908 0.71 0.395901
Target:  5'- cGGCGCG-GACCGGGGUCggGC-CCa- -3'
miRNA:   3'- -UCGCGCaCUGGCUCCGGuaCGaGGgg -5'
29484 3' -60.7 NC_006151.1 + 10992 0.69 0.540218
Target:  5'- uGGaGCG-GGCCGGGGgcCCcgGCUCgCCCg -3'
miRNA:   3'- -UCgCGCaCUGGCUCC--GGuaCGAG-GGG- -5'
29484 3' -60.7 NC_006151.1 + 11457 0.67 0.618919
Target:  5'- -cCGCGUGcccCCGGGGCCAUcgGCUggaacaCCCUg -3'
miRNA:   3'- ucGCGCACu--GGCUCCGGUA--CGA------GGGG- -5'
29484 3' -60.7 NC_006151.1 + 12762 0.68 0.599056
Target:  5'- gAGgGC-UGGCuCGAGGCCA-GCgcgCCCUu -3'
miRNA:   3'- -UCgCGcACUG-GCUCCGGUaCGa--GGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.