miRNA display CGI


Results 1 - 20 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29484 3' -60.7 NC_006151.1 + 140045 0.68 0.599056
Target:  5'- aGGUGCGgccgcacgccACCGAGGCggcgcgCGUGCUCCgCg -3'
miRNA:   3'- -UCGCGCac--------UGGCUCCG------GUACGAGGgG- -5'
29484 3' -60.7 NC_006151.1 + 139308 0.69 0.530584
Target:  5'- cGGCGCGUGcuGCuCGA--CCGUGCUCgCCg -3'
miRNA:   3'- -UCGCGCAC--UG-GCUccGGUACGAGgGG- -5'
29484 3' -60.7 NC_006151.1 + 138556 0.67 0.627873
Target:  5'- gGGCGCGUacuacgcGACCGucGCCc-GCcugCCCCa -3'
miRNA:   3'- -UCGCGCA-------CUGGCucCGGuaCGa--GGGG- -5'
29484 3' -60.7 NC_006151.1 + 137915 0.67 0.6587
Target:  5'- cGGCgGCGgcuGCCacGGGcGCC-UGCUCCCCu -3'
miRNA:   3'- -UCG-CGCac-UGG--CUC-CGGuACGAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 137773 0.7 0.447245
Target:  5'- cGCGCGUGcuCCaGcAGGCCGUGCUgCUg -3'
miRNA:   3'- uCGCGCACu-GG-C-UCCGGUACGAgGGg -5'
29484 3' -60.7 NC_006151.1 + 135957 0.68 0.593113
Target:  5'- cGGCGCGgGACguccuCGAGGCCAUGgacgaggcggccaccUUCgCCCu -3'
miRNA:   3'- -UCGCGCaCUG-----GCUCCGGUAC---------------GAG-GGG- -5'
29484 3' -60.7 NC_006151.1 + 135809 0.71 0.395901
Target:  5'- gAGCGC---GCCGAGGCCGaGCUuuuagcgcgccgCCCCg -3'
miRNA:   3'- -UCGCGcacUGGCUCCGGUaCGA------------GGGG- -5'
29484 3' -60.7 NC_006151.1 + 135501 0.74 0.260259
Target:  5'- cGCGCGgccucGGCCGAGGCCAUcacgUCCUCg -3'
miRNA:   3'- uCGCGCa----CUGGCUCCGGUAcg--AGGGG- -5'
29484 3' -60.7 NC_006151.1 + 135013 0.66 0.668615
Target:  5'- gGGCGCGggggGGCagcagCGGGGCCGcGUcgUCCUCg -3'
miRNA:   3'- -UCGCGCa---CUG-----GCUCCGGUaCG--AGGGG- -5'
29484 3' -60.7 NC_006151.1 + 134119 0.68 0.600048
Target:  5'- uGGUGUGccgGAguCCGGGGCCGgagggauuuuauaagGUUCCCCu -3'
miRNA:   3'- -UCGCGCa--CU--GGCUCCGGUa--------------CGAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 133627 0.68 0.56945
Target:  5'- gGGuCGCGgcGGCCGGGGCgGUGgUCCg- -3'
miRNA:   3'- -UC-GCGCa-CUGGCUCCGgUACgAGGgg -5'
29484 3' -60.7 NC_006151.1 + 133162 0.7 0.447245
Target:  5'- cGGCGCGggcgugGGCCucGGCCAcGCgUCCCa -3'
miRNA:   3'- -UCGCGCa-----CUGGcuCCGGUaCG-AGGGg -5'
29484 3' -60.7 NC_006151.1 + 132853 0.71 0.429714
Target:  5'- cGgGCGgccgGcCCGGGGCCGcGCcCCCCa -3'
miRNA:   3'- uCgCGCa---CuGGCUCCGGUaCGaGGGG- -5'
29484 3' -60.7 NC_006151.1 + 131231 0.68 0.549911
Target:  5'- -aCGCGUcGCCGucGGCCGccacguacaGCUCCCCg -3'
miRNA:   3'- ucGCGCAcUGGCu-CCGGUa--------CGAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 131026 0.68 0.596083
Target:  5'- uAGCGgGUGAaggccucccgcucgUCGGGGCCGgagGCcgUCUCCa -3'
miRNA:   3'- -UCGCgCACU--------------GGCUCCGGUa--CG--AGGGG- -5'
29484 3' -60.7 NC_006151.1 + 130958 0.69 0.530584
Target:  5'- cGCGCG-GGCgCGGGGgCcgGUaCCCCg -3'
miRNA:   3'- uCGCGCaCUG-GCUCCgGuaCGaGGGG- -5'
29484 3' -60.7 NC_006151.1 + 130254 0.7 0.447245
Target:  5'- aGGCGCG-GAa-GAGGCCGgcgcGCggCCCCg -3'
miRNA:   3'- -UCGCGCaCUggCUCCGGUa---CGa-GGGG- -5'
29484 3' -60.7 NC_006151.1 + 129763 0.69 0.530584
Target:  5'- cAGCGCGaaGGCgaCGAGGgCGUcGCUCCCg -3'
miRNA:   3'- -UCGCGCa-CUG--GCUCCgGUA-CGAGGGg -5'
29484 3' -60.7 NC_006151.1 + 126281 0.69 0.540218
Target:  5'- aGGCGaCGUGGaCGAGGCCAaGCUggaccaggCCCg -3'
miRNA:   3'- -UCGC-GCACUgGCUCCGGUaCGA--------GGGg -5'
29484 3' -60.7 NC_006151.1 + 125645 0.7 0.47793
Target:  5'- cGgGCGUGAUCGAgGGCCAgcUcggcgacgacaacgaGCUCCUCa -3'
miRNA:   3'- uCgCGCACUGGCU-CCGGU--A---------------CGAGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.