miRNA display CGI


Results 21 - 40 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29484 3' -60.7 NC_006151.1 + 117510 0.66 0.698156
Target:  5'- aAGCGCG-GACUcacGGGCCGcucggggGC-CCCCu -3'
miRNA:   3'- -UCGCGCaCUGGc--UCCGGUa------CGaGGGG- -5'
29484 3' -60.7 NC_006151.1 + 73339 0.66 0.68835
Target:  5'- cGCGCGUGGCgaaGAGGUUcUGCggcagguugCCCa -3'
miRNA:   3'- uCGCGCACUGg--CUCCGGuACGa--------GGGg -5'
29484 3' -60.7 NC_006151.1 + 81705 0.66 0.68835
Target:  5'- cGCGCGagguccaGCCGGGGCgCcgGgUCCUCg -3'
miRNA:   3'- uCGCGCac-----UGGCUCCG-GuaCgAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 85250 0.66 0.68835
Target:  5'- aGGCGC-UGGCCGAGGgCggGCgcaUCUCg -3'
miRNA:   3'- -UCGCGcACUGGCUCCgGuaCGa--GGGG- -5'
29484 3' -60.7 NC_006151.1 + 99090 0.66 0.684415
Target:  5'- uGGCGCGgcgccugcgcacgGACC-AGGgCGUGCUggcgcugcuggaCCCCg -3'
miRNA:   3'- -UCGCGCa------------CUGGcUCCgGUACGA------------GGGG- -5'
29484 3' -60.7 NC_006151.1 + 5007 0.66 0.6785
Target:  5'- uGCGCGggGGCCG-GGCgG-GCUCCg- -3'
miRNA:   3'- uCGCGCa-CUGGCuCCGgUaCGAGGgg -5'
29484 3' -60.7 NC_006151.1 + 5731 0.66 0.6785
Target:  5'- uGGCGCcggGGuCCGAGGCCGcGC-CgCCg -3'
miRNA:   3'- -UCGCGca-CU-GGCUCCGGUaCGaGgGG- -5'
29484 3' -60.7 NC_006151.1 + 23460 0.66 0.6785
Target:  5'- gGGCGgGUGAUCGuGaGcCCGUGCUUCaugCCg -3'
miRNA:   3'- -UCGCgCACUGGCuC-C-GGUACGAGG---GG- -5'
29484 3' -60.7 NC_006151.1 + 28187 0.66 0.6785
Target:  5'- gAGUGcCGUcGGCCGGGccGCCAcGCaCCCCu -3'
miRNA:   3'- -UCGC-GCA-CUGGCUC--CGGUaCGaGGGG- -5'
29484 3' -60.7 NC_006151.1 + 101595 0.66 0.6785
Target:  5'- cAGCGagcucCGgugGGCCGGGGCCuucGUGUUCUUCc -3'
miRNA:   3'- -UCGC-----GCa--CUGGCUCCGG---UACGAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 60558 0.66 0.677513
Target:  5'- aGGCGCGcGcCCagGAGGCCGaagaagcUGUcCCCCg -3'
miRNA:   3'- -UCGCGCaCuGG--CUCCGGU-------ACGaGGGG- -5'
29484 3' -60.7 NC_006151.1 + 84432 0.66 0.668615
Target:  5'- cGCGCGgcGGCgCGcGGcCCAUGUcCCCCc -3'
miRNA:   3'- uCGCGCa-CUG-GCuCC-GGUACGaGGGG- -5'
29484 3' -60.7 NC_006151.1 + 135013 0.66 0.668615
Target:  5'- gGGCGCGggggGGCagcagCGGGGCCGcGUcgUCCUCg -3'
miRNA:   3'- -UCGCGCa---CUG-----GCUCCGGUaCG--AGGGG- -5'
29484 3' -60.7 NC_006151.1 + 24736 0.66 0.668615
Target:  5'- aAGUGCGgcagGACC-AGGCaCGUcGCcgggCCCCg -3'
miRNA:   3'- -UCGCGCa---CUGGcUCCG-GUA-CGa---GGGG- -5'
29484 3' -60.7 NC_006151.1 + 58660 0.66 0.665643
Target:  5'- gGGCGCGgcgcagggccgccaUGACCGc-GCCGUGCgcgCCgCg -3'
miRNA:   3'- -UCGCGC--------------ACUGGCucCGGUACGa--GGgG- -5'
29484 3' -60.7 NC_006151.1 + 10571 0.67 0.6587
Target:  5'- uGGCGCGgccGGCuCGGcGGCCcgGCccuUCCuCCg -3'
miRNA:   3'- -UCGCGCa--CUG-GCU-CCGGuaCG---AGG-GG- -5'
29484 3' -60.7 NC_006151.1 + 66587 0.67 0.6587
Target:  5'- cGCGCGcGGCCGAGGCgCucgaCUUCgCCg -3'
miRNA:   3'- uCGCGCaCUGGCUCCG-Guac-GAGG-GG- -5'
29484 3' -60.7 NC_006151.1 + 137915 0.67 0.6587
Target:  5'- cGGCgGCGgcuGCCacGGGcGCC-UGCUCCCCu -3'
miRNA:   3'- -UCG-CGCac-UGG--CUC-CGGuACGAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 21536 0.67 0.6587
Target:  5'- cGGC-CGgGGCCGGGGCCGggGCcugggCCUCg -3'
miRNA:   3'- -UCGcGCaCUGGCUCCGGUa-CGa----GGGG- -5'
29484 3' -60.7 NC_006151.1 + 18853 0.67 0.6587
Target:  5'- uGGCGaCGUGGCCGuuguGGGUCAUcacgaGCacguacagCCCCg -3'
miRNA:   3'- -UCGC-GCACUGGC----UCCGGUA-----CGa-------GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.