miRNA display CGI


Results 41 - 60 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29484 3' -60.7 NC_006151.1 + 51415 0.67 0.6587
Target:  5'- cAGCGCGUGcacccguCCGuGGCCAUGaCgcggacgCCgCg -3'
miRNA:   3'- -UCGCGCACu------GGCuCCGGUAC-Ga------GGgG- -5'
29484 3' -60.7 NC_006151.1 + 125463 0.67 0.648766
Target:  5'- cAGCGcCGUGGCCacGGCCGcGCUCggCCa -3'
miRNA:   3'- -UCGC-GCACUGGcuCCGGUaCGAGg-GG- -5'
29484 3' -60.7 NC_006151.1 + 82675 0.67 0.648766
Target:  5'- cGGCGCGccgcGGgCGAGGgCGgcgGC-CCCCg -3'
miRNA:   3'- -UCGCGCa---CUgGCUCCgGUa--CGaGGGG- -5'
29484 3' -60.7 NC_006151.1 + 63182 0.67 0.648766
Target:  5'- gGGCGCa----CGGGGCCggGCUCgCCg -3'
miRNA:   3'- -UCGCGcacugGCUCCGGuaCGAGgGG- -5'
29484 3' -60.7 NC_006151.1 + 65733 0.67 0.648766
Target:  5'- uGCGCGcGGCCcaggagccggGAGGCCucg-UCCCCg -3'
miRNA:   3'- uCGCGCaCUGG----------CUCCGGuacgAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 47431 0.67 0.63882
Target:  5'- gAGUGCccaACCGGGGCCcgGCgguuacaucacCCCCa -3'
miRNA:   3'- -UCGCGcacUGGCUCCGGuaCGa----------GGGG- -5'
29484 3' -60.7 NC_006151.1 + 72174 0.67 0.63882
Target:  5'- gAGCaGCGgcgGGaCGAGGCacaCGUGgUCCCCg -3'
miRNA:   3'- -UCG-CGCa--CUgGCUCCG---GUACgAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 50478 0.67 0.63882
Target:  5'- cAGCGCGgcgcGACCGA-GCCGga--CCCCg -3'
miRNA:   3'- -UCGCGCa---CUGGCUcCGGUacgaGGGG- -5'
29484 3' -60.7 NC_006151.1 + 81225 0.67 0.63882
Target:  5'- cGGCGCGUGAacaCGAaGCUGgcGC-CCCCg -3'
miRNA:   3'- -UCGCGCACUg--GCUcCGGUa-CGaGGGG- -5'
29484 3' -60.7 NC_006151.1 + 95918 0.67 0.63882
Target:  5'- cGCGCGUGcagucgcCCGAGGgCGUGCgguugaagCUCUg -3'
miRNA:   3'- uCGCGCACu------GGCUCCgGUACGa-------GGGG- -5'
29484 3' -60.7 NC_006151.1 + 125579 0.67 0.637825
Target:  5'- uGCGCGUGcCCGGcgagcgcGGCaCGUGCUacagccgCCCg -3'
miRNA:   3'- uCGCGCACuGGCU-------CCG-GUACGAg------GGG- -5'
29484 3' -60.7 NC_006151.1 + 3945 0.67 0.628868
Target:  5'- gGGCGCGggcuccgcgGGCCcGGGCCGcGCggcggCCUCg -3'
miRNA:   3'- -UCGCGCa--------CUGGcUCCGGUaCGa----GGGG- -5'
29484 3' -60.7 NC_006151.1 + 14064 0.67 0.628868
Target:  5'- gGGUGCGUGGCgGcccGGCCGacgGCacucgccgCCCCa -3'
miRNA:   3'- -UCGCGCACUGgCu--CCGGUa--CGa-------GGGG- -5'
29484 3' -60.7 NC_006151.1 + 64810 0.67 0.628868
Target:  5'- -uCGCGgaaGCCGGcGGCCA-GCUCCUCc -3'
miRNA:   3'- ucGCGCac-UGGCU-CCGGUaCGAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 81591 0.67 0.628868
Target:  5'- cGCGCGUcGCCGGGGCCGccgGCgCgCa -3'
miRNA:   3'- uCGCGCAcUGGCUCCGGUa--CGaGgGg -5'
29484 3' -60.7 NC_006151.1 + 138556 0.67 0.627873
Target:  5'- gGGCGCGUacuacgcGACCGucGCCc-GCcugCCCCa -3'
miRNA:   3'- -UCGCGCA-------CUGGCucCGGuaCGa--GGGG- -5'
29484 3' -60.7 NC_006151.1 + 119005 0.67 0.618919
Target:  5'- cGCGC-UGGaCGAcuGGcCCGUGCUCUCCg -3'
miRNA:   3'- uCGCGcACUgGCU--CC-GGUACGAGGGG- -5'
29484 3' -60.7 NC_006151.1 + 77787 0.67 0.618919
Target:  5'- cGC-CGUGAaCGAGGCC-UGCUUCgCg -3'
miRNA:   3'- uCGcGCACUgGCUCCGGuACGAGGgG- -5'
29484 3' -60.7 NC_006151.1 + 11457 0.67 0.618919
Target:  5'- -cCGCGUGcccCCGGGGCCAUcgGCUggaacaCCCUg -3'
miRNA:   3'- ucGCGCACu--GGCUCCGGUA--CGA------GGGG- -5'
29484 3' -60.7 NC_006151.1 + 36576 0.67 0.618919
Target:  5'- cAGCGcCGgcacGGCgGGGGCCc-GCUuCCCCa -3'
miRNA:   3'- -UCGC-GCa---CUGgCUCCGGuaCGA-GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.