miRNA display CGI


Results 1 - 20 of 120 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29484 5' -52.8 NC_006151.1 + 7635 0.68 0.935946
Target:  5'- cGCGGucgcccCACCCGCGCCUcgCGcUCGGcGCg -3'
miRNA:   3'- -CGUUu-----GUGGGUGCGGGa-GC-AGCUaUG- -5'
29484 5' -52.8 NC_006151.1 + 11482 0.66 0.976635
Target:  5'- -gGAACACCCugaGCCUUCGcUGAgUGCu -3'
miRNA:   3'- cgUUUGUGGGug-CGGGAGCaGCU-AUG- -5'
29484 5' -52.8 NC_006151.1 + 15167 0.67 0.953988
Target:  5'- gGCGAcacgcGCGCCCugcgccGCGCCCUCuUUGAcuuuUACg -3'
miRNA:   3'- -CGUU-----UGUGGG------UGCGGGAGcAGCU----AUG- -5'
29484 5' -52.8 NC_006151.1 + 17454 0.66 0.973771
Target:  5'- aGCGcAGCACCaCGuguugccgcggcgUGUCCUCGUCGGcgGCg -3'
miRNA:   3'- -CGU-UUGUGG-GU-------------GCGGGAGCAGCUa-UG- -5'
29484 5' -52.8 NC_006151.1 + 18333 0.74 0.658979
Target:  5'- cGCAcguACAgCCCGuCGUCCUCGUCGcUGCu -3'
miRNA:   3'- -CGUu--UGU-GGGU-GCGGGAGCAGCuAUG- -5'
29484 5' -52.8 NC_006151.1 + 18439 0.69 0.913943
Target:  5'- gGCGGGCgucGCCCGCcUCCUCGUCGu--Cg -3'
miRNA:   3'- -CGUUUG---UGGGUGcGGGAGCAGCuauG- -5'
29484 5' -52.8 NC_006151.1 + 18522 0.67 0.957896
Target:  5'- aGCAugcGCGuCCC-CGCCCgCGUCGGcACc -3'
miRNA:   3'- -CGUu--UGU-GGGuGCGGGaGCAGCUaUG- -5'
29484 5' -52.8 NC_006151.1 + 20804 0.72 0.779752
Target:  5'- cGCAGACAgCCGCGgaaggCCUCGU-GGUGCa -3'
miRNA:   3'- -CGUUUGUgGGUGCg----GGAGCAgCUAUG- -5'
29484 5' -52.8 NC_006151.1 + 21259 0.74 0.679774
Target:  5'- cGCAcACGCCCaccaggagcGCGCCCaUCG-CGGUGCc -3'
miRNA:   3'- -CGUuUGUGGG---------UGCGGG-AGCaGCUAUG- -5'
29484 5' -52.8 NC_006151.1 + 21865 0.75 0.627639
Target:  5'- cCAGGCGCCgguaCugGCCCUCGUUGAa-- -3'
miRNA:   3'- cGUUUGUGG----GugCGGGAGCAGCUaug -5'
29484 5' -52.8 NC_006151.1 + 22291 0.67 0.96157
Target:  5'- cGCGGGCACggcguCCACGUCCgcgccgagCGUCGuccggGCg -3'
miRNA:   3'- -CGUUUGUG-----GGUGCGGGa-------GCAGCua---UG- -5'
29484 5' -52.8 NC_006151.1 + 23045 0.69 0.913943
Target:  5'- aGCGGGCggccgcggcgaGCCCACGaCCUCGaucUCGAUGu -3'
miRNA:   3'- -CGUUUG-----------UGGGUGCgGGAGC---AGCUAUg -5'
29484 5' -52.8 NC_006151.1 + 23165 0.7 0.858289
Target:  5'- gGCGGGagaGCCCACGaCCUCGaucUCGAUGu -3'
miRNA:   3'- -CGUUUg--UGGGUGCgGGAGC---AGCUAUg -5'
29484 5' -52.8 NC_006151.1 + 23357 0.72 0.770215
Target:  5'- gGCGGucACGuucuCCCagGCGCCCUCGUCGGUc- -3'
miRNA:   3'- -CGUU--UGU----GGG--UGCGGGAGCAGCUAug -5'
29484 5' -52.8 NC_006151.1 + 23396 0.67 0.957896
Target:  5'- -gAAGCACCCGCGCCagCGcUGGUGg -3'
miRNA:   3'- cgUUUGUGGGUGCGGgaGCaGCUAUg -5'
29484 5' -52.8 NC_006151.1 + 24415 0.69 0.907821
Target:  5'- aGCAccACcCCCGCGCCCcagaCGUCGAc-- -3'
miRNA:   3'- -CGUu-UGuGGGUGCGGGa---GCAGCUaug -5'
29484 5' -52.8 NC_006151.1 + 28207 0.69 0.907821
Target:  5'- cCAcGCACCCcuuuauCGCCC-CGUCGAggggGCc -3'
miRNA:   3'- cGUuUGUGGGu-----GCGGGaGCAGCUa---UG- -5'
29484 5' -52.8 NC_006151.1 + 30565 0.66 0.976635
Target:  5'- cGCAcGCGccguCCCGCgGCCC-CGUCGGg-- -3'
miRNA:   3'- -CGUuUGU----GGGUG-CGGGaGCAGCUaug -5'
29484 5' -52.8 NC_006151.1 + 35099 0.7 0.880908
Target:  5'- aGCAuGCGCCuCGCGCCCgCG-CGAg-- -3'
miRNA:   3'- -CGUuUGUGG-GUGCGGGaGCaGCUaug -5'
29484 5' -52.8 NC_006151.1 + 37872 0.68 0.925443
Target:  5'- cGCGGACcCCCGCGCCggggaggcgaC-CGUCGAgGCc -3'
miRNA:   3'- -CGUUUGuGGGUGCGG----------GaGCAGCUaUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.