miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29484 5' -52.8 NC_006151.1 + 46320 1.13 0.003354
Target:  5'- gGCAAACACCCACGCCCUCGUCGAUACg -3'
miRNA:   3'- -CGUUUGUGGGUGCGGGAGCAGCUAUG- -5'
29484 5' -52.8 NC_006151.1 + 139157 0.79 0.410613
Target:  5'- cGCuguACGCCCGCGCCCUCGUgUGGa-- -3'
miRNA:   3'- -CGuu-UGUGGGUGCGGGAGCA-GCUaug -5'
29484 5' -52.8 NC_006151.1 + 132406 0.77 0.494776
Target:  5'- cGCAccAGCugCCGgagcuUGCCCUCGUCGcgGCg -3'
miRNA:   3'- -CGU--UUGugGGU-----GCGGGAGCAGCuaUG- -5'
29484 5' -52.8 NC_006151.1 + 95217 0.77 0.52456
Target:  5'- aGCGGcuGCGCCgCACGCCCUCGacCGAgGCg -3'
miRNA:   3'- -CGUU--UGUGG-GUGCGGGAGCa-GCUaUG- -5'
29484 5' -52.8 NC_006151.1 + 82827 0.76 0.544791
Target:  5'- cCGAGCcccuCCCACGCCgUCGUCGuUGCc -3'
miRNA:   3'- cGUUUGu---GGGUGCGGgAGCAGCuAUG- -5'
29484 5' -52.8 NC_006151.1 + 21865 0.75 0.627639
Target:  5'- cCAGGCGCCgguaCugGCCCUCGUUGAa-- -3'
miRNA:   3'- cGUUUGUGG----GugCGGGAGCAGCUaug -5'
29484 5' -52.8 NC_006151.1 + 64792 0.75 0.638094
Target:  5'- cGCGAGCuggCCACGCCCUCG-CGGa-- -3'
miRNA:   3'- -CGUUUGug-GGUGCGGGAGCaGCUaug -5'
29484 5' -52.8 NC_006151.1 + 18333 0.74 0.658979
Target:  5'- cGCAcguACAgCCCGuCGUCCUCGUCGcUGCu -3'
miRNA:   3'- -CGUu--UGU-GGGU-GCGGGAGCAGCuAUG- -5'
29484 5' -52.8 NC_006151.1 + 97929 0.74 0.669392
Target:  5'- cGCcGAgGCCgCGCccGCCCUCGUCGAggGCg -3'
miRNA:   3'- -CGuUUgUGG-GUG--CGGGAGCAGCUa-UG- -5'
29484 5' -52.8 NC_006151.1 + 64244 0.74 0.669392
Target:  5'- cGCGAcggcgGCGCgggCCACGCUCUCGUUGAcGCg -3'
miRNA:   3'- -CGUU-----UGUG---GGUGCGGGAGCAGCUaUG- -5'
29484 5' -52.8 NC_006151.1 + 21259 0.74 0.679774
Target:  5'- cGCAcACGCCCaccaggagcGCGCCCaUCG-CGGUGCc -3'
miRNA:   3'- -CGUuUGUGGG---------UGCGGG-AGCaGCUAUG- -5'
29484 5' -52.8 NC_006151.1 + 38156 0.74 0.679774
Target:  5'- cGCGGACuCUguCGCCCUCGUCGcccGCa -3'
miRNA:   3'- -CGUUUGuGGguGCGGGAGCAGCua-UG- -5'
29484 5' -52.8 NC_006151.1 + 83107 0.73 0.700405
Target:  5'- aGCGGGCGCCCGCGCCggucgcagagCUCGggCGccuuGUACg -3'
miRNA:   3'- -CGUUUGUGGGUGCGG----------GAGCa-GC----UAUG- -5'
29484 5' -52.8 NC_006151.1 + 74459 0.73 0.710636
Target:  5'- gGCAGGCGCUCGgcgaGCCCgUCG-CGGUACa -3'
miRNA:   3'- -CGUUUGUGGGUg---CGGG-AGCaGCUAUG- -5'
29484 5' -52.8 NC_006151.1 + 132765 0.73 0.710636
Target:  5'- aGC-AGCGCCgG-GCCCUCGUCGAa-- -3'
miRNA:   3'- -CGuUUGUGGgUgCGGGAGCAGCUaug -5'
29484 5' -52.8 NC_006151.1 + 43864 0.73 0.730878
Target:  5'- gGUAcGCACCCugccuCGCCCccgcUCGUCGAgucgGCg -3'
miRNA:   3'- -CGUuUGUGGGu----GCGGG----AGCAGCUa---UG- -5'
29484 5' -52.8 NC_006151.1 + 139130 0.73 0.740871
Target:  5'- cGC--GCGCCCcguGCGCCCUCGUCu---- -3'
miRNA:   3'- -CGuuUGUGGG---UGCGGGAGCAGcuaug -5'
29484 5' -52.8 NC_006151.1 + 53433 0.73 0.740871
Target:  5'- cCGAGCAgCC-CGgCCUCGUCGAUcACg -3'
miRNA:   3'- cGUUUGUgGGuGCgGGAGCAGCUA-UG- -5'
29484 5' -52.8 NC_006151.1 + 101522 0.72 0.750764
Target:  5'- gGCAGAuCACCCAgGCCUUCGU-GGcGCg -3'
miRNA:   3'- -CGUUU-GUGGGUgCGGGAGCAgCUaUG- -5'
29484 5' -52.8 NC_006151.1 + 78948 0.72 0.760549
Target:  5'- cGCGcGCGCCCGCcCgCCUCGgucUCGGUGCc -3'
miRNA:   3'- -CGUuUGUGGGUGcG-GGAGC---AGCUAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.