miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29484 5' -52.8 NC_006151.1 + 23357 0.72 0.770215
Target:  5'- gGCGGucACGuucuCCCagGCGCCCUCGUCGGUc- -3'
miRNA:   3'- -CGUU--UGU----GGG--UGCGGGAGCAGCUAug -5'
29484 5' -52.8 NC_006151.1 + 66228 0.72 0.779752
Target:  5'- gGC--GCGCCCGCGCagaagCUCGaCGGUGCg -3'
miRNA:   3'- -CGuuUGUGGGUGCGg----GAGCaGCUAUG- -5'
29484 5' -52.8 NC_006151.1 + 20804 0.72 0.779752
Target:  5'- cGCAGACAgCCGCGgaaggCCUCGU-GGUGCa -3'
miRNA:   3'- -CGUUUGUgGGUGCg----GGAGCAgCUAUG- -5'
29484 5' -52.8 NC_006151.1 + 111370 0.72 0.789152
Target:  5'- gGCGAGgGCCCcuCGCCgUCGUCGccGCc -3'
miRNA:   3'- -CGUUUgUGGGu-GCGGgAGCAGCuaUG- -5'
29484 5' -52.8 NC_006151.1 + 138500 0.71 0.798404
Target:  5'- gGCGGGCGCCCGCugcaccuccucGUCCUCGgggUGAUGg -3'
miRNA:   3'- -CGUUUGUGGGUG-----------CGGGAGCa--GCUAUg -5'
29484 5' -52.8 NC_006151.1 + 139282 0.71 0.798404
Target:  5'- gGCGGACGCgC-CGCCCUCGgCGucUGCg -3'
miRNA:   3'- -CGUUUGUGgGuGCGGGAGCaGCu-AUG- -5'
29484 5' -52.8 NC_006151.1 + 61408 0.71 0.833754
Target:  5'- gGCGAACGCCCcgcCGUCCUCcUCGGc-- -3'
miRNA:   3'- -CGUUUGUGGGu--GCGGGAGcAGCUaug -5'
29484 5' -52.8 NC_006151.1 + 130601 0.71 0.833754
Target:  5'- gGCAccAGCGCCUcccagGCGUCCUgGUCGcgGCu -3'
miRNA:   3'- -CGU--UUGUGGG-----UGCGGGAgCAGCuaUG- -5'
29484 5' -52.8 NC_006151.1 + 37970 0.7 0.850315
Target:  5'- gGCGGACGCCUGCGUCCUggccUGcCGcgGCg -3'
miRNA:   3'- -CGUUUGUGGGUGCGGGA----GCaGCuaUG- -5'
29484 5' -52.8 NC_006151.1 + 23165 0.7 0.858289
Target:  5'- gGCGGGagaGCCCACGaCCUCGaucUCGAUGu -3'
miRNA:   3'- -CGUUUg--UGGGUGCgGGAGC---AGCUAUg -5'
29484 5' -52.8 NC_006151.1 + 73464 0.7 0.858289
Target:  5'- uGCAggUgcaGCCCGcCGCCgCUC-UCGGUGCg -3'
miRNA:   3'- -CGUuuG---UGGGU-GCGG-GAGcAGCUAUG- -5'
29484 5' -52.8 NC_006151.1 + 130090 0.7 0.866051
Target:  5'- cGCGAGCAgCUCGCGCuCCUCGgccgUGAaGCc -3'
miRNA:   3'- -CGUUUGU-GGGUGCG-GGAGCa---GCUaUG- -5'
29484 5' -52.8 NC_006151.1 + 94032 0.7 0.866051
Target:  5'- cGCAcguAGCGCUCGCGCgCCgcggCGUCGccGCg -3'
miRNA:   3'- -CGU---UUGUGGGUGCG-GGa---GCAGCuaUG- -5'
29484 5' -52.8 NC_006151.1 + 50389 0.7 0.866051
Target:  5'- cGCGGGC-CCCGCgGUCCUCG-CGcgGCc -3'
miRNA:   3'- -CGUUUGuGGGUG-CGGGAGCaGCuaUG- -5'
29484 5' -52.8 NC_006151.1 + 52035 0.7 0.866051
Target:  5'- gGCGAAgGCCgGCGCCgUCG-CG-UGCg -3'
miRNA:   3'- -CGUUUgUGGgUGCGGgAGCaGCuAUG- -5'
29484 5' -52.8 NC_006151.1 + 82062 0.7 0.873592
Target:  5'- cGUAGGCGgCCACGUCgcgcaUCGUCuGGUGCa -3'
miRNA:   3'- -CGUUUGUgGGUGCGGg----AGCAG-CUAUG- -5'
29484 5' -52.8 NC_006151.1 + 35099 0.7 0.880908
Target:  5'- aGCAuGCGCCuCGCGCCCgCG-CGAg-- -3'
miRNA:   3'- -CGUuUGUGG-GUGCGGGaGCaGCUaug -5'
29484 5' -52.8 NC_006151.1 + 136044 0.7 0.880908
Target:  5'- aGCAGguGCGCCCGCGCaCCggcaaCGcCGAgUACg -3'
miRNA:   3'- -CGUU--UGUGGGUGCG-GGa----GCaGCU-AUG- -5'
29484 5' -52.8 NC_006151.1 + 97623 0.7 0.880908
Target:  5'- uGCGAGCGgCgCGCGgCCaugUCGUUGGUGCg -3'
miRNA:   3'- -CGUUUGUgG-GUGCgGG---AGCAGCUAUG- -5'
29484 5' -52.8 NC_006151.1 + 130899 0.7 0.880908
Target:  5'- gGCGGcgGCCguCGCCgUCGUCGGUGg -3'
miRNA:   3'- -CGUUugUGGguGCGGgAGCAGCUAUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.