miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29484 5' -52.8 NC_006151.1 + 118799 0.66 0.968239
Target:  5'- gGCGcGGCGCaCCugGCCUUCGaCGAg-- -3'
miRNA:   3'- -CGU-UUGUG-GGugCGGGAGCaGCUaug -5'
29484 5' -52.8 NC_006151.1 + 136884 0.66 0.968239
Target:  5'- -gGAGCGCCuCGCGCCCcaCGgcugGGUGCg -3'
miRNA:   3'- cgUUUGUGG-GUGCGGGa-GCag--CUAUG- -5'
29484 5' -52.8 NC_006151.1 + 120363 0.66 0.968239
Target:  5'- cGCGGGCGCCUaccaGCGCCCggacacggcCGUgGAcgUGCu -3'
miRNA:   3'- -CGUUUGUGGG----UGCGGGa--------GCAgCU--AUG- -5'
29484 5' -52.8 NC_006151.1 + 58056 0.66 0.967926
Target:  5'- aGCGcGCAguaguaguccucgUCCGCGCCCUCG-CGGg-- -3'
miRNA:   3'- -CGUuUGU-------------GGGUGCGGGAGCaGCUaug -5'
29484 5' -52.8 NC_006151.1 + 137474 0.67 0.966331
Target:  5'- aGgAGGCGCCCugggacgacgacgcCGCCCUCGcCGAc-- -3'
miRNA:   3'- -CgUUUGUGGGu-------------GCGGGAGCaGCUaug -5'
29484 5' -52.8 NC_006151.1 + 121473 0.67 0.965016
Target:  5'- gGCAAGCGCCCGC-CCC-CGgaggaCGAc-- -3'
miRNA:   3'- -CGUUUGUGGGUGcGGGaGCa----GCUaug -5'
29484 5' -52.8 NC_006151.1 + 84317 0.67 0.965016
Target:  5'- cGCGAugGCCgcgaccgugCGCGgCCUCGcCGAgUACg -3'
miRNA:   3'- -CGUUugUGG---------GUGCgGGAGCaGCU-AUG- -5'
29484 5' -52.8 NC_006151.1 + 100727 0.67 0.965016
Target:  5'- aGCAGGCgccGCCCGCGCCCgccuucacgccCGagGAgcUGCg -3'
miRNA:   3'- -CGUUUG---UGGGUGCGGGa----------GCagCU--AUG- -5'
29484 5' -52.8 NC_006151.1 + 83377 0.67 0.965016
Target:  5'- cGCAGGCGCCgCAgGUgCUCGUcCGGg-- -3'
miRNA:   3'- -CGUUUGUGG-GUgCGgGAGCA-GCUaug -5'
29484 5' -52.8 NC_006151.1 + 22291 0.67 0.96157
Target:  5'- cGCGGGCACggcguCCACGUCCgcgccgagCGUCGuccggGCg -3'
miRNA:   3'- -CGUUUGUG-----GGUGCGGGa-------GCAGCua---UG- -5'
29484 5' -52.8 NC_006151.1 + 78792 0.67 0.96157
Target:  5'- gGCGAcuCGCCCGCgGCCCUcCG-CGggGCc -3'
miRNA:   3'- -CGUUu-GUGGGUG-CGGGA-GCaGCuaUG- -5'
29484 5' -52.8 NC_006151.1 + 103446 0.67 0.96157
Target:  5'- cGCAcaucACGgCCACGCCCgugcCGggcaCGGUGCu -3'
miRNA:   3'- -CGUu---UGUgGGUGCGGGa---GCa---GCUAUG- -5'
29484 5' -52.8 NC_006151.1 + 23396 0.67 0.957896
Target:  5'- -gAAGCACCCGCGCCagCGcUGGUGg -3'
miRNA:   3'- cgUUUGUGGGUGCGGgaGCaGCUAUg -5'
29484 5' -52.8 NC_006151.1 + 18522 0.67 0.957896
Target:  5'- aGCAugcGCGuCCC-CGCCCgCGUCGGcACc -3'
miRNA:   3'- -CGUu--UGU-GGGuGCGGGaGCAGCUaUG- -5'
29484 5' -52.8 NC_006151.1 + 58814 0.67 0.957896
Target:  5'- cGCGuACGCgCCG-GCCC-CGUCGcgGCa -3'
miRNA:   3'- -CGUuUGUG-GGUgCGGGaGCAGCuaUG- -5'
29484 5' -52.8 NC_006151.1 + 90736 0.67 0.957896
Target:  5'- cGguGGCGgCgGCGCCCUCGggggCGGcggGCa -3'
miRNA:   3'- -CguUUGUgGgUGCGGGAGCa---GCUa--UG- -5'
29484 5' -52.8 NC_006151.1 + 93729 0.67 0.957896
Target:  5'- gGCAAACAgCUgguggAUGCgggCCUCGUCGggGCg -3'
miRNA:   3'- -CGUUUGUgGG-----UGCG---GGAGCAGCuaUG- -5'
29484 5' -52.8 NC_006151.1 + 114248 0.67 0.957896
Target:  5'- cGCGGG-ACCCcucggagcGCGCCCUCGaggaGGUGCu -3'
miRNA:   3'- -CGUUUgUGGG--------UGCGGGAGCag--CUAUG- -5'
29484 5' -52.8 NC_006151.1 + 130414 0.67 0.957896
Target:  5'- cGCGAGCGCggGCGCgCCgacCGUCGAggacUGCa -3'
miRNA:   3'- -CGUUUGUGggUGCG-GGa--GCAGCU----AUG- -5'
29484 5' -52.8 NC_006151.1 + 118466 0.67 0.953988
Target:  5'- cGCGGACGCgCACGCggccuaCCUCGU-GGUGg -3'
miRNA:   3'- -CGUUUGUGgGUGCG------GGAGCAgCUAUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.