miRNA display CGI


Results 41 - 60 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29485 3' -53.8 NC_006151.1 + 57134 0.68 0.91694
Target:  5'- cGGUCgccccugcgcacgCGGCGGggg-CGAGGGCGuCCc -3'
miRNA:   3'- -CCAGa------------GCUGCCaguaGCUCUCGCuGG- -5'
29485 3' -53.8 NC_006151.1 + 83167 0.68 0.913463
Target:  5'- uGGagCUCGG-GGUCGUCGcgcGGGCGGCa -3'
miRNA:   3'- -CCa-GAGCUgCCAGUAGCu--CUCGCUGg -5'
29485 3' -53.8 NC_006151.1 + 81583 0.68 0.913463
Target:  5'- gGGUCUCGcGCGcGUCGcCGGG-GCcGCCg -3'
miRNA:   3'- -CCAGAGC-UGC-CAGUaGCUCuCGcUGG- -5'
29485 3' -53.8 NC_006151.1 + 23147 0.68 0.913463
Target:  5'- cGGgccCUCGGCGGgagCggCGGGAGagcccaCGACCu -3'
miRNA:   3'- -CCa--GAGCUGCCa--GuaGCUCUC------GCUGG- -5'
29485 3' -53.8 NC_006151.1 + 45284 0.69 0.90748
Target:  5'- gGGUgagCGGCGGUCGUCccGAG-GACCc -3'
miRNA:   3'- -CCAga-GCUGCCAGUAGcuCUCgCUGG- -5'
29485 3' -53.8 NC_006151.1 + 70991 0.69 0.90748
Target:  5'- aGGaCUCGGCcguGGcCAUCGuGGGCG-CCa -3'
miRNA:   3'- -CCaGAGCUG---CCaGUAGCuCUCGCuGG- -5'
29485 3' -53.8 NC_006151.1 + 55886 0.69 0.901264
Target:  5'- uGUCgCGGCGGaCGUgCGccGGGCGACCg -3'
miRNA:   3'- cCAGaGCUGCCaGUA-GCu-CUCGCUGG- -5'
29485 3' -53.8 NC_006151.1 + 56009 0.69 0.888142
Target:  5'- cGGUCUucaCGAgcgccuCGGUgacugacgcgcgCGUCGAGGGCGGCg -3'
miRNA:   3'- -CCAGA---GCU------GCCA------------GUAGCUCUCGCUGg -5'
29485 3' -53.8 NC_006151.1 + 99349 0.69 0.888142
Target:  5'- cGUCggcugcaCGGCGGUCGUCGGcGGCGucgugcACCg -3'
miRNA:   3'- cCAGa------GCUGCCAGUAGCUcUCGC------UGG- -5'
29485 3' -53.8 NC_006151.1 + 75886 0.69 0.888142
Target:  5'- gGGUCaugcgcgCGACGGcCAcCGAGGGCGcggugcaguucACCa -3'
miRNA:   3'- -CCAGa------GCUGCCaGUaGCUCUCGC-----------UGG- -5'
29485 3' -53.8 NC_006151.1 + 68012 0.69 0.881244
Target:  5'- cGGgCUCGGCGG-CGUCcAGguccaGGCGGCCc -3'
miRNA:   3'- -CCaGAGCUGCCaGUAGcUC-----UCGCUGG- -5'
29485 3' -53.8 NC_006151.1 + 55510 0.7 0.85463
Target:  5'- cGGgacCUCGGCcacgaGGUCAUCGAcaucacgcgcgccauGGGCGACg -3'
miRNA:   3'- -CCa--GAGCUG-----CCAGUAGCU---------------CUCGCUGg -5'
29485 3' -53.8 NC_006151.1 + 133435 0.7 0.843566
Target:  5'- gGGUCUUGGCGGccgaggcgcUCuuggccccgGUCGAGgcccgcgaGGCGGCCg -3'
miRNA:   3'- -CCAGAGCUGCC---------AG---------UAGCUC--------UCGCUGG- -5'
29485 3' -53.8 NC_006151.1 + 135252 0.7 0.843566
Target:  5'- -cUCUCGGCGGUCAUgCGcAGGGCcuGCUc -3'
miRNA:   3'- ccAGAGCUGCCAGUA-GC-UCUCGc-UGG- -5'
29485 3' -53.8 NC_006151.1 + 4372 0.71 0.835433
Target:  5'- gGGcCUCGACGGUCGccuccccggcgCGGGGguccgcggcGCGGCCc -3'
miRNA:   3'- -CCaGAGCUGCCAGUa----------GCUCU---------CGCUGG- -5'
29485 3' -53.8 NC_006151.1 + 21428 0.71 0.827118
Target:  5'- gGGcCUCGGgGGUCGcggCGuGGGGUGGCCc -3'
miRNA:   3'- -CCaGAGCUgCCAGUa--GC-UCUCGCUGG- -5'
29485 3' -53.8 NC_006151.1 + 142238 0.71 0.827118
Target:  5'- gGGUCgcgacgaggCGuCGGUCAUCGcggcgaGGAGCGcCCc -3'
miRNA:   3'- -CCAGa--------GCuGCCAGUAGC------UCUCGCuGG- -5'
29485 3' -53.8 NC_006151.1 + 127359 0.71 0.818626
Target:  5'- cGGUCUCGcccuggGCGGggaCcgCGGGGGUGGCg -3'
miRNA:   3'- -CCAGAGC------UGCCa--GuaGCUCUCGCUGg -5'
29485 3' -53.8 NC_006151.1 + 6332 0.71 0.818626
Target:  5'- cGGUCUCGAUGaaGUCAaaGAGAucGuCGGCCa -3'
miRNA:   3'- -CCAGAGCUGC--CAGUagCUCU--C-GCUGG- -5'
29485 3' -53.8 NC_006151.1 + 90736 0.71 0.809967
Target:  5'- cGGUggCGGCGG-CGcccUCGGGGGCGGCg -3'
miRNA:   3'- -CCAgaGCUGCCaGU---AGCUCUCGCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.