miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29485 3' -53.8 NC_006151.1 + 34357 0.67 0.960372
Target:  5'- uGUCUCGugGGgugggaGGGGG-GACCg -3'
miRNA:   3'- cCAGAGCugCCaguag-CUCUCgCUGG- -5'
29485 3' -53.8 NC_006151.1 + 122767 0.67 0.960372
Target:  5'- -aUCaUCGACGGgcugC-UCGuGGGCGGCUg -3'
miRNA:   3'- ccAG-AGCUGCCa---GuAGCuCUCGCUGG- -5'
29485 3' -53.8 NC_006151.1 + 115653 0.67 0.956718
Target:  5'- uGUCgcggcCGAUGGUCGUCac-GGUGGCCg -3'
miRNA:   3'- cCAGa----GCUGCCAGUAGcucUCGCUGG- -5'
29485 3' -53.8 NC_006151.1 + 107017 0.67 0.956718
Target:  5'- cGGcUCUCGGCGcUgAUCGcGGcGCGGCCc -3'
miRNA:   3'- -CC-AGAGCUGCcAgUAGC-UCuCGCUGG- -5'
29485 3' -53.8 NC_006151.1 + 78587 0.67 0.952841
Target:  5'- gGGcCUggagcUGGCGGUCAU-GAuGAGCGACg -3'
miRNA:   3'- -CCaGA-----GCUGCCAGUAgCU-CUCGCUGg -5'
29485 3' -53.8 NC_006151.1 + 6365 0.67 0.952841
Target:  5'- uGGUCUCGAUcggGGUCuuUCugccuGAGCGagGCCg -3'
miRNA:   3'- -CCAGAGCUG---CCAGu-AGcu---CUCGC--UGG- -5'
29485 3' -53.8 NC_006151.1 + 15344 0.67 0.948738
Target:  5'- -cUCUCcccgcCGGUCAUCGAGGGC--CCg -3'
miRNA:   3'- ccAGAGcu---GCCAGUAGCUCUCGcuGG- -5'
29485 3' -53.8 NC_006151.1 + 139486 0.67 0.948738
Target:  5'- cGGccccgCUCGcaccACGGUCAUgGAGgacAGCGGCa -3'
miRNA:   3'- -CCa----GAGC----UGCCAGUAgCUC---UCGCUGg -5'
29485 3' -53.8 NC_006151.1 + 66467 0.67 0.947462
Target:  5'- uGGUCcCGGCGGUCGgcacgcugcacaacUgcugCGAGAGCGcgcggaucuucGCCg -3'
miRNA:   3'- -CCAGaGCUGCCAGU--------------A----GCUCUCGC-----------UGG- -5'
29485 3' -53.8 NC_006151.1 + 36627 0.68 0.939837
Target:  5'- cGGUCUCGGCGccCggCGGcGGCGGCg -3'
miRNA:   3'- -CCAGAGCUGCcaGuaGCUcUCGCUGg -5'
29485 3' -53.8 NC_006151.1 + 17118 0.68 0.939837
Target:  5'- gGGcUCcggCGGCGGUgcugCGGGAgGCGGCCa -3'
miRNA:   3'- -CC-AGa--GCUGCCAgua-GCUCU-CGCUGG- -5'
29485 3' -53.8 NC_006151.1 + 64856 0.68 0.938896
Target:  5'- gGGcCUCGGCGGagGgccgcugcccggCGGGAGCagGGCCg -3'
miRNA:   3'- -CCaGAGCUGCCagUa-----------GCUCUCG--CUGG- -5'
29485 3' -53.8 NC_006151.1 + 61821 0.68 0.935035
Target:  5'- uGGUgCUCuacGCGG-CGUCGAcGGUGGCCg -3'
miRNA:   3'- -CCA-GAGc--UGCCaGUAGCUcUCGCUGG- -5'
29485 3' -53.8 NC_006151.1 + 67761 0.68 0.935035
Target:  5'- cGUCggggugCGGCGucgCGUUGAGGGCGuCCa -3'
miRNA:   3'- cCAGa-----GCUGCca-GUAGCUCUCGCuGG- -5'
29485 3' -53.8 NC_006151.1 + 92105 0.68 0.929998
Target:  5'- cGUCUCGgaccGCGG-CAucuUCGGGAaCGGCCg -3'
miRNA:   3'- cCAGAGC----UGCCaGU---AGCUCUcGCUGG- -5'
29485 3' -53.8 NC_006151.1 + 23684 0.68 0.929998
Target:  5'- cGUCUCGACGGagggcauggCGUCcccGGGGCaGCCg -3'
miRNA:   3'- cCAGAGCUGCCa--------GUAGc--UCUCGcUGG- -5'
29485 3' -53.8 NC_006151.1 + 142279 0.68 0.928962
Target:  5'- cGUCcCGGCGGcCAgaccggccgggaCGAGAGCGAgCg -3'
miRNA:   3'- cCAGaGCUGCCaGUa-----------GCUCUCGCUgG- -5'
29485 3' -53.8 NC_006151.1 + 91712 0.68 0.924723
Target:  5'- aGGUcCUCGAgGccGUCGUCGAacAGCGACa -3'
miRNA:   3'- -CCA-GAGCUgC--CAGUAGCUc-UCGCUGg -5'
29485 3' -53.8 NC_006151.1 + 105422 0.68 0.924723
Target:  5'- --gUUCGugGGgcgCAUCGAGAGCa--- -3'
miRNA:   3'- ccaGAGCugCCa--GUAGCUCUCGcugg -5'
29485 3' -53.8 NC_006151.1 + 62088 0.68 0.919211
Target:  5'- cGUcCUCGgcGCGGUCGgccUGGGcGCGGCCg -3'
miRNA:   3'- cCA-GAGC--UGCCAGUa--GCUCuCGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.