Results 21 - 40 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29485 | 3' | -53.8 | NC_006151.1 | + | 66467 | 0.67 | 0.947462 |
Target: 5'- uGGUCcCGGCGGUCGgcacgcugcacaacUgcugCGAGAGCGcgcggaucuucGCCg -3' miRNA: 3'- -CCAGaGCUGCCAGU--------------A----GCUCUCGC-----------UGG- -5' |
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29485 | 3' | -53.8 | NC_006151.1 | + | 15344 | 0.67 | 0.948738 |
Target: 5'- -cUCUCcccgcCGGUCAUCGAGGGC--CCg -3' miRNA: 3'- ccAGAGcu---GCCAGUAGCUCUCGcuGG- -5' |
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29485 | 3' | -53.8 | NC_006151.1 | + | 139486 | 0.67 | 0.948738 |
Target: 5'- cGGccccgCUCGcaccACGGUCAUgGAGgacAGCGGCa -3' miRNA: 3'- -CCa----GAGC----UGCCAGUAgCUC---UCGCUGg -5' |
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29485 | 3' | -53.8 | NC_006151.1 | + | 6365 | 0.67 | 0.952841 |
Target: 5'- uGGUCUCGAUcggGGUCuuUCugccuGAGCGagGCCg -3' miRNA: 3'- -CCAGAGCUG---CCAGu-AGcu---CUCGC--UGG- -5' |
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29485 | 3' | -53.8 | NC_006151.1 | + | 78587 | 0.67 | 0.952841 |
Target: 5'- gGGcCUggagcUGGCGGUCAU-GAuGAGCGACg -3' miRNA: 3'- -CCaGA-----GCUGCCAGUAgCU-CUCGCUGg -5' |
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29485 | 3' | -53.8 | NC_006151.1 | + | 107017 | 0.67 | 0.956718 |
Target: 5'- cGGcUCUCGGCGcUgAUCGcGGcGCGGCCc -3' miRNA: 3'- -CC-AGAGCUGCcAgUAGC-UCuCGCUGG- -5' |
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29485 | 3' | -53.8 | NC_006151.1 | + | 115653 | 0.67 | 0.956718 |
Target: 5'- uGUCgcggcCGAUGGUCGUCac-GGUGGCCg -3' miRNA: 3'- cCAGa----GCUGCCAGUAGcucUCGCUGG- -5' |
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29485 | 3' | -53.8 | NC_006151.1 | + | 34357 | 0.67 | 0.960372 |
Target: 5'- uGUCUCGugGGgugggaGGGGG-GACCg -3' miRNA: 3'- cCAGAGCugCCaguag-CUCUCgCUGG- -5' |
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29485 | 3' | -53.8 | NC_006151.1 | + | 122767 | 0.67 | 0.960372 |
Target: 5'- -aUCaUCGACGGgcugC-UCGuGGGCGGCUg -3' miRNA: 3'- ccAG-AGCUGCCa---GuAGCuCUCGCUGG- -5' |
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29485 | 3' | -53.8 | NC_006151.1 | + | 62088 | 0.68 | 0.919211 |
Target: 5'- cGUcCUCGgcGCGGUCGgccUGGGcGCGGCCg -3' miRNA: 3'- cCA-GAGC--UGCCAGUa--GCUCuCGCUGG- -5' |
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29485 | 3' | -53.8 | NC_006151.1 | + | 105422 | 0.68 | 0.924723 |
Target: 5'- --gUUCGugGGgcgCAUCGAGAGCa--- -3' miRNA: 3'- ccaGAGCugCCa--GUAGCUCUCGcugg -5' |
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29485 | 3' | -53.8 | NC_006151.1 | + | 142279 | 0.68 | 0.928962 |
Target: 5'- cGUCcCGGCGGcCAgaccggccgggaCGAGAGCGAgCg -3' miRNA: 3'- cCAGaGCUGCCaGUa-----------GCUCUCGCUgG- -5' |
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29485 | 3' | -53.8 | NC_006151.1 | + | 91712 | 0.68 | 0.924723 |
Target: 5'- aGGUcCUCGAgGccGUCGUCGAacAGCGACa -3' miRNA: 3'- -CCA-GAGCUgC--CAGUAGCUc-UCGCUGg -5' |
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29485 | 3' | -53.8 | NC_006151.1 | + | 23684 | 0.68 | 0.929998 |
Target: 5'- cGUCUCGACGGagggcauggCGUCcccGGGGCaGCCg -3' miRNA: 3'- cCAGAGCUGCCa--------GUAGc--UCUCGcUGG- -5' |
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29485 | 3' | -53.8 | NC_006151.1 | + | 92105 | 0.68 | 0.929998 |
Target: 5'- cGUCUCGgaccGCGG-CAucuUCGGGAaCGGCCg -3' miRNA: 3'- cCAGAGC----UGCCaGU---AGCUCUcGCUGG- -5' |
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29485 | 3' | -53.8 | NC_006151.1 | + | 67761 | 0.68 | 0.935035 |
Target: 5'- cGUCggggugCGGCGucgCGUUGAGGGCGuCCa -3' miRNA: 3'- cCAGa-----GCUGCca-GUAGCUCUCGCuGG- -5' |
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29485 | 3' | -53.8 | NC_006151.1 | + | 61821 | 0.68 | 0.935035 |
Target: 5'- uGGUgCUCuacGCGG-CGUCGAcGGUGGCCg -3' miRNA: 3'- -CCA-GAGc--UGCCaGUAGCUcUCGCUGG- -5' |
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29485 | 3' | -53.8 | NC_006151.1 | + | 64856 | 0.68 | 0.938896 |
Target: 5'- gGGcCUCGGCGGagGgccgcugcccggCGGGAGCagGGCCg -3' miRNA: 3'- -CCaGAGCUGCCagUa-----------GCUCUCG--CUGG- -5' |
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29485 | 3' | -53.8 | NC_006151.1 | + | 17118 | 0.68 | 0.939837 |
Target: 5'- gGGcUCcggCGGCGGUgcugCGGGAgGCGGCCa -3' miRNA: 3'- -CC-AGa--GCUGCCAgua-GCUCU-CGCUGG- -5' |
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29485 | 3' | -53.8 | NC_006151.1 | + | 57134 | 0.68 | 0.91694 |
Target: 5'- cGGUCgccccugcgcacgCGGCGGggg-CGAGGGCGuCCc -3' miRNA: 3'- -CCAGa------------GCUGCCaguaGCUCUCGCuGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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