miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29485 3' -53.8 NC_006151.1 + 36627 0.68 0.939837
Target:  5'- cGGUCUCGGCGccCggCGGcGGCGGCg -3'
miRNA:   3'- -CCAGAGCUGCcaGuaGCUcUCGCUGg -5'
29485 3' -53.8 NC_006151.1 + 41176 0.66 0.970041
Target:  5'- uGGUC-CuGCGGUgGUCGAGGGgGGu- -3'
miRNA:   3'- -CCAGaGcUGCCAgUAGCUCUCgCUgg -5'
29485 3' -53.8 NC_006151.1 + 44376 0.75 0.604729
Target:  5'- gGGUUgCGACGGUCccgccgCGGGGGCG-CCg -3'
miRNA:   3'- -CCAGaGCUGCCAGua----GCUCUCGCuGG- -5'
29485 3' -53.8 NC_006151.1 + 45284 0.69 0.90748
Target:  5'- gGGUgagCGGCGGUCGUCccGAG-GACCc -3'
miRNA:   3'- -CCAga-GCUGCCAGUAGcuCUCgCUGG- -5'
29485 3' -53.8 NC_006151.1 + 46196 1.14 0.002916
Target:  5'- aGGUCUCGACGGUCAUCGAGAGCGACCc -3'
miRNA:   3'- -CCAGAGCUGCCAGUAGCUCUCGCUGG- -5'
29485 3' -53.8 NC_006151.1 + 55510 0.7 0.85463
Target:  5'- cGGgacCUCGGCcacgaGGUCAUCGAcaucacgcgcgccauGGGCGACg -3'
miRNA:   3'- -CCa--GAGCUG-----CCAGUAGCU---------------CUCGCUGg -5'
29485 3' -53.8 NC_006151.1 + 55886 0.69 0.901264
Target:  5'- uGUCgCGGCGGaCGUgCGccGGGCGACCg -3'
miRNA:   3'- cCAGaGCUGCCaGUA-GCu-CUCGCUGG- -5'
29485 3' -53.8 NC_006151.1 + 56009 0.69 0.888142
Target:  5'- cGGUCUucaCGAgcgccuCGGUgacugacgcgcgCGUCGAGGGCGGCg -3'
miRNA:   3'- -CCAGA---GCU------GCCA------------GUAGCUCUCGCUGg -5'
29485 3' -53.8 NC_006151.1 + 57134 0.68 0.91694
Target:  5'- cGGUCgccccugcgcacgCGGCGGggg-CGAGGGCGuCCc -3'
miRNA:   3'- -CCAGa------------GCUGCCaguaGCUCUCGCuGG- -5'
29485 3' -53.8 NC_006151.1 + 61294 0.66 0.969159
Target:  5'- cGGaagCUCGACGGgcgCGUCGcgcugcagguccagGGAGacgccCGGCCa -3'
miRNA:   3'- -CCa--GAGCUGCCa--GUAGC--------------UCUC-----GCUGG- -5'
29485 3' -53.8 NC_006151.1 + 61821 0.68 0.935035
Target:  5'- uGGUgCUCuacGCGG-CGUCGAcGGUGGCCg -3'
miRNA:   3'- -CCA-GAGc--UGCCaGUAGCUcUCGCUGG- -5'
29485 3' -53.8 NC_006151.1 + 62088 0.68 0.919211
Target:  5'- cGUcCUCGgcGCGGUCGgccUGGGcGCGGCCg -3'
miRNA:   3'- cCA-GAGC--UGCCAGUa--GCUCuCGCUGG- -5'
29485 3' -53.8 NC_006151.1 + 64528 0.66 0.972852
Target:  5'- aGGcCgCcGCGGccgCGUCGGGGGCGGCg -3'
miRNA:   3'- -CCaGaGcUGCCa--GUAGCUCUCGCUGg -5'
29485 3' -53.8 NC_006151.1 + 64856 0.68 0.938896
Target:  5'- gGGcCUCGGCGGagGgccgcugcccggCGGGAGCagGGCCg -3'
miRNA:   3'- -CCaGAGCUGCCagUa-----------GCUCUCG--CUGG- -5'
29485 3' -53.8 NC_006151.1 + 66467 0.67 0.947462
Target:  5'- uGGUCcCGGCGGUCGgcacgcugcacaacUgcugCGAGAGCGcgcggaucuucGCCg -3'
miRNA:   3'- -CCAGaGCUGCCAGU--------------A----GCUCUCGC-----------UGG- -5'
29485 3' -53.8 NC_006151.1 + 67761 0.68 0.935035
Target:  5'- cGUCggggugCGGCGucgCGUUGAGGGCGuCCa -3'
miRNA:   3'- cCAGa-----GCUGCca-GUAGCUCUCGCuGG- -5'
29485 3' -53.8 NC_006151.1 + 68012 0.69 0.881244
Target:  5'- cGGgCUCGGCGG-CGUCcAGguccaGGCGGCCc -3'
miRNA:   3'- -CCaGAGCUGCCaGUAGcUC-----UCGCUGG- -5'
29485 3' -53.8 NC_006151.1 + 70951 0.72 0.764441
Target:  5'- -uUCUCGGCGGUgcgcguggcCGUCGAGGGCaACa -3'
miRNA:   3'- ccAGAGCUGCCA---------GUAGCUCUCGcUGg -5'
29485 3' -53.8 NC_006151.1 + 70991 0.69 0.90748
Target:  5'- aGGaCUCGGCcguGGcCAUCGuGGGCG-CCa -3'
miRNA:   3'- -CCaGAGCUG---CCaGUAGCuCUCGCuGG- -5'
29485 3' -53.8 NC_006151.1 + 72626 0.66 0.963807
Target:  5'- cGGUC-CGGCGGUCccgCGGucccGCGGCUc -3'
miRNA:   3'- -CCAGaGCUGCCAGua-GCUcu--CGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.