miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29485 3' -53.8 NC_006151.1 + 3419 0.66 0.963807
Target:  5'- gGGUCUCGcCGGc---CGGGAcGCGGCg -3'
miRNA:   3'- -CCAGAGCuGCCaguaGCUCU-CGCUGg -5'
29485 3' -53.8 NC_006151.1 + 4195 0.66 0.963807
Target:  5'- --cCUCGaggcagGCGGgcc-CGAGGGCGGCCg -3'
miRNA:   3'- ccaGAGC------UGCCaguaGCUCUCGCUGG- -5'
29485 3' -53.8 NC_006151.1 + 4372 0.71 0.835433
Target:  5'- gGGcCUCGACGGUCGccuccccggcgCGGGGguccgcggcGCGGCCc -3'
miRNA:   3'- -CCaGAGCUGCCAGUa----------GCUCU---------CGCUGG- -5'
29485 3' -53.8 NC_006151.1 + 5447 0.72 0.783063
Target:  5'- cGGg--CGACGGUC-UCGAcGGCGACg -3'
miRNA:   3'- -CCagaGCUGCCAGuAGCUcUCGCUGg -5'
29485 3' -53.8 NC_006151.1 + 6167 0.74 0.635274
Target:  5'- cGGcCUCGGCGGcgUCGUCG-GAGaagaGGCCg -3'
miRNA:   3'- -CCaGAGCUGCC--AGUAGCuCUCg---CUGG- -5'
29485 3' -53.8 NC_006151.1 + 6332 0.71 0.818626
Target:  5'- cGGUCUCGAUGaaGUCAaaGAGAucGuCGGCCa -3'
miRNA:   3'- -CCAGAGCUGC--CAGUagCUCU--C-GCUGG- -5'
29485 3' -53.8 NC_006151.1 + 6365 0.67 0.952841
Target:  5'- uGGUCUCGAUcggGGUCuuUCugccuGAGCGagGCCg -3'
miRNA:   3'- -CCAGAGCUG---CCAGu-AGcu---CUCGC--UGG- -5'
29485 3' -53.8 NC_006151.1 + 14486 0.66 0.975467
Target:  5'- cGGg-UgGGCGGggGUCGGGAGgGAUCg -3'
miRNA:   3'- -CCagAgCUGCCagUAGCUCUCgCUGG- -5'
29485 3' -53.8 NC_006151.1 + 15344 0.67 0.948738
Target:  5'- -cUCUCcccgcCGGUCAUCGAGGGC--CCg -3'
miRNA:   3'- ccAGAGcu---GCCAGUAGCUCUCGcuGG- -5'
29485 3' -53.8 NC_006151.1 + 17118 0.68 0.939837
Target:  5'- gGGcUCcggCGGCGGUgcugCGGGAgGCGGCCa -3'
miRNA:   3'- -CC-AGa--GCUGCCAgua-GCUCU-CGCUGG- -5'
29485 3' -53.8 NC_006151.1 + 19852 0.72 0.780302
Target:  5'- cGUCUCGGCGGagaggcucggggccUCgGUgGAGAGCG-CCa -3'
miRNA:   3'- cCAGAGCUGCC--------------AG-UAgCUCUCGCuGG- -5'
29485 3' -53.8 NC_006151.1 + 20493 0.77 0.51392
Target:  5'- gGGUCgUCGGCGGcUCuggcucgAUCGGGGGCGGCg -3'
miRNA:   3'- -CCAG-AGCUGCC-AG-------UAGCUCUCGCUGg -5'
29485 3' -53.8 NC_006151.1 + 21428 0.71 0.827118
Target:  5'- gGGcCUCGGgGGUCGcggCGuGGGGUGGCCc -3'
miRNA:   3'- -CCaGAGCUgCCAGUa--GC-UCUCGCUGG- -5'
29485 3' -53.8 NC_006151.1 + 23147 0.68 0.913463
Target:  5'- cGGgccCUCGGCGGgagCggCGGGAGagcccaCGACCu -3'
miRNA:   3'- -CCa--GAGCUGCCa--GuaGCUCUC------GCUGG- -5'
29485 3' -53.8 NC_006151.1 + 23684 0.68 0.929998
Target:  5'- cGUCUCGACGGagggcauggCGUCcccGGGGCaGCCg -3'
miRNA:   3'- cCAGAGCUGCCa--------GUAGc--UCUCGcUGG- -5'
29485 3' -53.8 NC_006151.1 + 24446 0.66 0.975467
Target:  5'- uGGUgUCGuaGCGGUCGcgCGcGAGC-ACCu -3'
miRNA:   3'- -CCAgAGC--UGCCAGUa-GCuCUCGcUGG- -5'
29485 3' -53.8 NC_006151.1 + 24485 0.75 0.593564
Target:  5'- uGGUCUCGAUGGUCccggCGAGcccguaaaaguugGGCGccGCCa -3'
miRNA:   3'- -CCAGAGCUGCCAGua--GCUC-------------UCGC--UGG- -5'
29485 3' -53.8 NC_006151.1 + 28155 0.66 0.975467
Target:  5'- cGGUCgauccccgUCGGC-GUCGUUGGG-GCGGCg -3'
miRNA:   3'- -CCAG--------AGCUGcCAGUAGCUCuCGCUGg -5'
29485 3' -53.8 NC_006151.1 + 34357 0.67 0.960372
Target:  5'- uGUCUCGugGGgugggaGGGGG-GACCg -3'
miRNA:   3'- cCAGAGCugCCaguag-CUCUCgCUGG- -5'
29485 3' -53.8 NC_006151.1 + 34700 0.73 0.735657
Target:  5'- gGGUCUCGG-GGUC-UCGcGAGUGGCa -3'
miRNA:   3'- -CCAGAGCUgCCAGuAGCuCUCGCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.