miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29485 3' -53.8 NC_006151.1 + 142279 0.68 0.928962
Target:  5'- cGUCcCGGCGGcCAgaccggccgggaCGAGAGCGAgCg -3'
miRNA:   3'- cCAGaGCUGCCaGUa-----------GCUCUCGCUgG- -5'
29485 3' -53.8 NC_006151.1 + 142238 0.71 0.827118
Target:  5'- gGGUCgcgacgaggCGuCGGUCAUCGcggcgaGGAGCGcCCc -3'
miRNA:   3'- -CCAGa--------GCuGCCAGUAGC------UCUCGCuGG- -5'
29485 3' -53.8 NC_006151.1 + 140354 0.66 0.967028
Target:  5'- uGG-CUCGcaucgccCGcGUCGUCGAGcGCGGCUc -3'
miRNA:   3'- -CCaGAGCu------GC-CAGUAGCUCuCGCUGG- -5'
29485 3' -53.8 NC_006151.1 + 139486 0.67 0.948738
Target:  5'- cGGccccgCUCGcaccACGGUCAUgGAGgacAGCGGCa -3'
miRNA:   3'- -CCa----GAGC----UGCCAGUAgCUC---UCGCUGg -5'
29485 3' -53.8 NC_006151.1 + 135252 0.7 0.843566
Target:  5'- -cUCUCGGCGGUCAUgCGcAGGGCcuGCUc -3'
miRNA:   3'- ccAGAGCUGCCAGUA-GC-UCUCGc-UGG- -5'
29485 3' -53.8 NC_006151.1 + 133693 0.66 0.963807
Target:  5'- -----aGGCGGUCucGUCGGcGGCGACCc -3'
miRNA:   3'- ccagagCUGCCAG--UAGCUcUCGCUGG- -5'
29485 3' -53.8 NC_006151.1 + 133435 0.7 0.843566
Target:  5'- gGGUCUUGGCGGccgaggcgcUCuuggccccgGUCGAGgcccgcgaGGCGGCCg -3'
miRNA:   3'- -CCAGAGCUGCC---------AG---------UAGCUC--------UCGCUGG- -5'
29485 3' -53.8 NC_006151.1 + 131819 0.66 0.972852
Target:  5'- cGGcCUCGGCuagcGUCAcCGuggugaugagcGGGGCGGCCg -3'
miRNA:   3'- -CCaGAGCUGc---CAGUaGC-----------UCUCGCUGG- -5'
29485 3' -53.8 NC_006151.1 + 130516 0.66 0.97258
Target:  5'- cGUCUCGggcGCGGgcgucgCGUacacgcccccgcgCGAGGGCGGCg -3'
miRNA:   3'- cCAGAGC---UGCCa-----GUA-------------GCUCUCGCUGg -5'
29485 3' -53.8 NC_006151.1 + 128392 0.72 0.773814
Target:  5'- aGGUCcaCGGCGGcCA-CGAcGGCGGCCg -3'
miRNA:   3'- -CCAGa-GCUGCCaGUaGCUcUCGCUGG- -5'
29485 3' -53.8 NC_006151.1 + 128055 0.71 0.792177
Target:  5'- cGGcagCGGCGGcugCG-CGGGGGCGACCg -3'
miRNA:   3'- -CCagaGCUGCCa--GUaGCUCUCGCUGG- -5'
29485 3' -53.8 NC_006151.1 + 127425 0.66 0.967028
Target:  5'- gGGUCgccUCGGCGcUCGUgcgCGAGAGcCGGCg -3'
miRNA:   3'- -CCAG---AGCUGCcAGUA---GCUCUC-GCUGg -5'
29485 3' -53.8 NC_006151.1 + 127359 0.71 0.818626
Target:  5'- cGGUCUCGcccuggGCGGggaCcgCGGGGGUGGCg -3'
miRNA:   3'- -CCAGAGC------UGCCa--GuaGCUCUCGCUGg -5'
29485 3' -53.8 NC_006151.1 + 125190 0.66 0.967028
Target:  5'- cGGcCUCGcCGG-CGUCGuGGgccccGCGGCCc -3'
miRNA:   3'- -CCaGAGCuGCCaGUAGCuCU-----CGCUGG- -5'
29485 3' -53.8 NC_006151.1 + 122767 0.67 0.960372
Target:  5'- -aUCaUCGACGGgcugC-UCGuGGGCGGCUg -3'
miRNA:   3'- ccAG-AGCUGCCa---GuAGCuCUCGCUGG- -5'
29485 3' -53.8 NC_006151.1 + 115653 0.67 0.956718
Target:  5'- uGUCgcggcCGAUGGUCGUCac-GGUGGCCg -3'
miRNA:   3'- cCAGa----GCUGCCAGUAGcucUCGCUGG- -5'
29485 3' -53.8 NC_006151.1 + 107017 0.67 0.956718
Target:  5'- cGGcUCUCGGCGcUgAUCGcGGcGCGGCCc -3'
miRNA:   3'- -CC-AGAGCUGCcAgUAGC-UCuCGCUGG- -5'
29485 3' -53.8 NC_006151.1 + 106964 0.66 0.970041
Target:  5'- uGGcgCUCGACGacaacccCAUCGAGAacGCGugCc -3'
miRNA:   3'- -CCa-GAGCUGCca-----GUAGCUCU--CGCugG- -5'
29485 3' -53.8 NC_006151.1 + 105422 0.68 0.924723
Target:  5'- --gUUCGugGGgcgCAUCGAGAGCa--- -3'
miRNA:   3'- ccaGAGCugCCa--GUAGCUCUCGcugg -5'
29485 3' -53.8 NC_006151.1 + 99349 0.69 0.888142
Target:  5'- cGUCggcugcaCGGCGGUCGUCGGcGGCGucgugcACCg -3'
miRNA:   3'- cCAGa------GCUGCCAGUAGCUcUCGC------UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.