miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29485 3' -53.8 NC_006151.1 + 46196 1.14 0.002916
Target:  5'- aGGUCUCGACGGUCAUCGAGAGCGACCc -3'
miRNA:   3'- -CCAGAGCUGCCAGUAGCUCUCGCUGG- -5'
29485 3' -53.8 NC_006151.1 + 20493 0.77 0.51392
Target:  5'- gGGUCgUCGGCGGcUCuggcucgAUCGGGGGCGGCg -3'
miRNA:   3'- -CCAG-AGCUGCC-AG-------UAGCUCUCGCUGg -5'
29485 3' -53.8 NC_006151.1 + 24485 0.75 0.593564
Target:  5'- uGGUCUCGAUGGUCccggCGAGcccguaaaaguugGGCGccGCCa -3'
miRNA:   3'- -CCAGAGCUGCCAGua--GCUC-------------UCGC--UGG- -5'
29485 3' -53.8 NC_006151.1 + 44376 0.75 0.604729
Target:  5'- gGGUUgCGACGGUCccgccgCGGGGGCG-CCg -3'
miRNA:   3'- -CCAGaGCUGCCAGua----GCUCUCGCuGG- -5'
29485 3' -53.8 NC_006151.1 + 76258 0.75 0.625084
Target:  5'- gGGcCUCGACGGcgAUCGAGAagGCGGCg -3'
miRNA:   3'- -CCaGAGCUGCCagUAGCUCU--CGCUGg -5'
29485 3' -53.8 NC_006151.1 + 6167 0.74 0.635274
Target:  5'- cGGcCUCGGCGGcgUCGUCG-GAGaagaGGCCg -3'
miRNA:   3'- -CCaGAGCUGCC--AGUAGCuCUCg---CUGG- -5'
29485 3' -53.8 NC_006151.1 + 34700 0.73 0.735657
Target:  5'- gGGUCUCGG-GGUC-UCGcGAGUGGCa -3'
miRNA:   3'- -CCAGAGCUgCCAGuAGCuCUCGCUGg -5'
29485 3' -53.8 NC_006151.1 + 70951 0.72 0.764441
Target:  5'- -uUCUCGGCGGUgcgcguggcCGUCGAGGGCaACa -3'
miRNA:   3'- ccAGAGCUGCCA---------GUAGCUCUCGcUGg -5'
29485 3' -53.8 NC_006151.1 + 128392 0.72 0.773814
Target:  5'- aGGUCcaCGGCGGcCA-CGAcGGCGGCCg -3'
miRNA:   3'- -CCAGa-GCUGCCaGUaGCUcUCGCUGG- -5'
29485 3' -53.8 NC_006151.1 + 19852 0.72 0.780302
Target:  5'- cGUCUCGGCGGagaggcucggggccUCgGUgGAGAGCG-CCa -3'
miRNA:   3'- cCAGAGCUGCC--------------AG-UAgCUCUCGCuGG- -5'
29485 3' -53.8 NC_006151.1 + 5447 0.72 0.783063
Target:  5'- cGGg--CGACGGUC-UCGAcGGCGACg -3'
miRNA:   3'- -CCagaGCUGCCAGuAGCUcUCGCUGg -5'
29485 3' -53.8 NC_006151.1 + 128055 0.71 0.792177
Target:  5'- cGGcagCGGCGGcugCG-CGGGGGCGACCg -3'
miRNA:   3'- -CCagaGCUGCCa--GUaGCUCUCGCUGG- -5'
29485 3' -53.8 NC_006151.1 + 90736 0.71 0.809967
Target:  5'- cGGUggCGGCGG-CGcccUCGGGGGCGGCg -3'
miRNA:   3'- -CCAgaGCUGCCaGU---AGCUCUCGCUGg -5'
29485 3' -53.8 NC_006151.1 + 6332 0.71 0.818626
Target:  5'- cGGUCUCGAUGaaGUCAaaGAGAucGuCGGCCa -3'
miRNA:   3'- -CCAGAGCUGC--CAGUagCUCU--C-GCUGG- -5'
29485 3' -53.8 NC_006151.1 + 127359 0.71 0.818626
Target:  5'- cGGUCUCGcccuggGCGGggaCcgCGGGGGUGGCg -3'
miRNA:   3'- -CCAGAGC------UGCCa--GuaGCUCUCGCUGg -5'
29485 3' -53.8 NC_006151.1 + 142238 0.71 0.827118
Target:  5'- gGGUCgcgacgaggCGuCGGUCAUCGcggcgaGGAGCGcCCc -3'
miRNA:   3'- -CCAGa--------GCuGCCAGUAGC------UCUCGCuGG- -5'
29485 3' -53.8 NC_006151.1 + 21428 0.71 0.827118
Target:  5'- gGGcCUCGGgGGUCGcggCGuGGGGUGGCCc -3'
miRNA:   3'- -CCaGAGCUgCCAGUa--GC-UCUCGCUGG- -5'
29485 3' -53.8 NC_006151.1 + 4372 0.71 0.835433
Target:  5'- gGGcCUCGACGGUCGccuccccggcgCGGGGguccgcggcGCGGCCc -3'
miRNA:   3'- -CCaGAGCUGCCAGUa----------GCUCU---------CGCUGG- -5'
29485 3' -53.8 NC_006151.1 + 135252 0.7 0.843566
Target:  5'- -cUCUCGGCGGUCAUgCGcAGGGCcuGCUc -3'
miRNA:   3'- ccAGAGCUGCCAGUA-GC-UCUCGc-UGG- -5'
29485 3' -53.8 NC_006151.1 + 133435 0.7 0.843566
Target:  5'- gGGUCUUGGCGGccgaggcgcUCuuggccccgGUCGAGgcccgcgaGGCGGCCg -3'
miRNA:   3'- -CCAGAGCUGCC---------AG---------UAGCUC--------UCGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.