Results 21 - 40 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29485 | 3' | -53.8 | NC_006151.1 | + | 55510 | 0.7 | 0.85463 |
Target: 5'- cGGgacCUCGGCcacgaGGUCAUCGAcaucacgcgcgccauGGGCGACg -3' miRNA: 3'- -CCa--GAGCUG-----CCAGUAGCU---------------CUCGCUGg -5' |
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29485 | 3' | -53.8 | NC_006151.1 | + | 68012 | 0.69 | 0.881244 |
Target: 5'- cGGgCUCGGCGG-CGUCcAGguccaGGCGGCCc -3' miRNA: 3'- -CCaGAGCUGCCaGUAGcUC-----UCGCUGG- -5' |
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29485 | 3' | -53.8 | NC_006151.1 | + | 75886 | 0.69 | 0.888142 |
Target: 5'- gGGUCaugcgcgCGACGGcCAcCGAGGGCGcggugcaguucACCa -3' miRNA: 3'- -CCAGa------GCUGCCaGUaGCUCUCGC-----------UGG- -5' |
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29485 | 3' | -53.8 | NC_006151.1 | + | 99349 | 0.69 | 0.888142 |
Target: 5'- cGUCggcugcaCGGCGGUCGUCGGcGGCGucgugcACCg -3' miRNA: 3'- cCAGa------GCUGCCAGUAGCUcUCGC------UGG- -5' |
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29485 | 3' | -53.8 | NC_006151.1 | + | 56009 | 0.69 | 0.888142 |
Target: 5'- cGGUCUucaCGAgcgccuCGGUgacugacgcgcgCGUCGAGGGCGGCg -3' miRNA: 3'- -CCAGA---GCU------GCCA------------GUAGCUCUCGCUGg -5' |
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29485 | 3' | -53.8 | NC_006151.1 | + | 55886 | 0.69 | 0.901264 |
Target: 5'- uGUCgCGGCGGaCGUgCGccGGGCGACCg -3' miRNA: 3'- cCAGaGCUGCCaGUA-GCu-CUCGCUGG- -5' |
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29485 | 3' | -53.8 | NC_006151.1 | + | 45284 | 0.69 | 0.90748 |
Target: 5'- gGGUgagCGGCGGUCGUCccGAG-GACCc -3' miRNA: 3'- -CCAga-GCUGCCAGUAGcuCUCgCUGG- -5' |
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29485 | 3' | -53.8 | NC_006151.1 | + | 70991 | 0.69 | 0.90748 |
Target: 5'- aGGaCUCGGCcguGGcCAUCGuGGGCG-CCa -3' miRNA: 3'- -CCaGAGCUG---CCaGUAGCuCUCGCuGG- -5' |
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29485 | 3' | -53.8 | NC_006151.1 | + | 81583 | 0.68 | 0.913463 |
Target: 5'- gGGUCUCGcGCGcGUCGcCGGG-GCcGCCg -3' miRNA: 3'- -CCAGAGC-UGC-CAGUaGCUCuCGcUGG- -5' |
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29485 | 3' | -53.8 | NC_006151.1 | + | 23147 | 0.68 | 0.913463 |
Target: 5'- cGGgccCUCGGCGGgagCggCGGGAGagcccaCGACCu -3' miRNA: 3'- -CCa--GAGCUGCCa--GuaGCUCUC------GCUGG- -5' |
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29485 | 3' | -53.8 | NC_006151.1 | + | 83167 | 0.68 | 0.913463 |
Target: 5'- uGGagCUCGG-GGUCGUCGcgcGGGCGGCa -3' miRNA: 3'- -CCa-GAGCUgCCAGUAGCu--CUCGCUGg -5' |
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29485 | 3' | -53.8 | NC_006151.1 | + | 57134 | 0.68 | 0.91694 |
Target: 5'- cGGUCgccccugcgcacgCGGCGGggg-CGAGGGCGuCCc -3' miRNA: 3'- -CCAGa------------GCUGCCaguaGCUCUCGCuGG- -5' |
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29485 | 3' | -53.8 | NC_006151.1 | + | 62088 | 0.68 | 0.919211 |
Target: 5'- cGUcCUCGgcGCGGUCGgccUGGGcGCGGCCg -3' miRNA: 3'- cCA-GAGC--UGCCAGUa--GCUCuCGCUGG- -5' |
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29485 | 3' | -53.8 | NC_006151.1 | + | 105422 | 0.68 | 0.924723 |
Target: 5'- --gUUCGugGGgcgCAUCGAGAGCa--- -3' miRNA: 3'- ccaGAGCugCCa--GUAGCUCUCGcugg -5' |
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29485 | 3' | -53.8 | NC_006151.1 | + | 91712 | 0.68 | 0.924723 |
Target: 5'- aGGUcCUCGAgGccGUCGUCGAacAGCGACa -3' miRNA: 3'- -CCA-GAGCUgC--CAGUAGCUc-UCGCUGg -5' |
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29485 | 3' | -53.8 | NC_006151.1 | + | 142279 | 0.68 | 0.928962 |
Target: 5'- cGUCcCGGCGGcCAgaccggccgggaCGAGAGCGAgCg -3' miRNA: 3'- cCAGaGCUGCCaGUa-----------GCUCUCGCUgG- -5' |
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29485 | 3' | -53.8 | NC_006151.1 | + | 92105 | 0.68 | 0.929998 |
Target: 5'- cGUCUCGgaccGCGG-CAucuUCGGGAaCGGCCg -3' miRNA: 3'- cCAGAGC----UGCCaGU---AGCUCUcGCUGG- -5' |
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29485 | 3' | -53.8 | NC_006151.1 | + | 23684 | 0.68 | 0.929998 |
Target: 5'- cGUCUCGACGGagggcauggCGUCcccGGGGCaGCCg -3' miRNA: 3'- cCAGAGCUGCCa--------GUAGc--UCUCGcUGG- -5' |
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29485 | 3' | -53.8 | NC_006151.1 | + | 61821 | 0.68 | 0.935035 |
Target: 5'- uGGUgCUCuacGCGG-CGUCGAcGGUGGCCg -3' miRNA: 3'- -CCA-GAGc--UGCCaGUAGCUcUCGCUGG- -5' |
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29485 | 3' | -53.8 | NC_006151.1 | + | 67761 | 0.68 | 0.935035 |
Target: 5'- cGUCggggugCGGCGucgCGUUGAGGGCGuCCa -3' miRNA: 3'- cCAGa-----GCUGCca-GUAGCUCUCGCuGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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