miRNA display CGI


Results 41 - 60 of 145 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29486 3' -57.5 NC_006151.1 + 63743 0.66 0.813
Target:  5'- -aCCUCCGgCGCGUcGGCGG-GGCGUc -3'
miRNA:   3'- uaGGAGGUgGUGCAcCUGUCgCUGCG- -5'
29486 3' -57.5 NC_006151.1 + 86723 0.66 0.813
Target:  5'- gGUCgCggcgcgCCGCCGCGaGGcCGGCGuGCGCg -3'
miRNA:   3'- -UAG-Ga-----GGUGGUGCaCCuGUCGC-UGCG- -5'
29486 3' -57.5 NC_006151.1 + 69692 0.67 0.807767
Target:  5'- -gCCUcgccgucgaugguggCCGCCGCcggGGGCAGCaGCGCg -3'
miRNA:   3'- uaGGA---------------GGUGGUGca-CCUGUCGcUGCG- -5'
29486 3' -57.5 NC_006151.1 + 141495 0.67 0.807767
Target:  5'- -gCCUCCGcggcgacgggcgucuCCACGgGGGCcgaGGCGACGg -3'
miRNA:   3'- uaGGAGGU---------------GGUGCaCCUG---UCGCUGCg -5'
29486 3' -57.5 NC_006151.1 + 10194 0.67 0.804247
Target:  5'- -gCCggUCGCgGCGcGGGCGGCGGCuGCa -3'
miRNA:   3'- uaGGa-GGUGgUGCaCCUGUCGCUG-CG- -5'
29486 3' -57.5 NC_006151.1 + 68582 0.67 0.804247
Target:  5'- --gCUCuCGCC-CGgGaGACAGCGAUGCg -3'
miRNA:   3'- uagGAG-GUGGuGCaC-CUGUCGCUGCG- -5'
29486 3' -57.5 NC_006151.1 + 59509 0.67 0.795341
Target:  5'- -gCCUCCGCgACGcGcGcGCAGCGcCGCg -3'
miRNA:   3'- uaGGAGGUGgUGCaC-C-UGUCGCuGCG- -5'
29486 3' -57.5 NC_006151.1 + 64329 0.67 0.795341
Target:  5'- -gCCUCgCACCACGUcGGCGGgaaGCGCg -3'
miRNA:   3'- uaGGAG-GUGGUGCAcCUGUCgc-UGCG- -5'
29486 3' -57.5 NC_006151.1 + 49664 0.67 0.795341
Target:  5'- -cCCUCCggGCCGCGcccggaGGAC-GCGgACGCg -3'
miRNA:   3'- uaGGAGG--UGGUGCa-----CCUGuCGC-UGCG- -5'
29486 3' -57.5 NC_006151.1 + 90257 0.67 0.786289
Target:  5'- -cCCagcCCGCgGCGaaGACGGCGGCGCc -3'
miRNA:   3'- uaGGa--GGUGgUGCacCUGUCGCUGCG- -5'
29486 3' -57.5 NC_006151.1 + 93564 0.67 0.786289
Target:  5'- ---gUCCGCCGCGgGGGCGgGCG-CGCc -3'
miRNA:   3'- uaggAGGUGGUGCaCCUGU-CGCuGCG- -5'
29486 3' -57.5 NC_006151.1 + 53764 0.67 0.780792
Target:  5'- --aCgCCGCCgagagcuuggcguagACGUucuGGGCGGCGACGCg -3'
miRNA:   3'- uagGaGGUGG---------------UGCA---CCUGUCGCUGCG- -5'
29486 3' -57.5 NC_006151.1 + 137842 0.67 0.777101
Target:  5'- --aCUUCACCuuCGUGGACacgGGCGuguACGCg -3'
miRNA:   3'- uagGAGGUGGu-GCACCUG---UCGC---UGCG- -5'
29486 3' -57.5 NC_006151.1 + 63993 0.67 0.777101
Target:  5'- -aUCUCCGuCUGCGUGcGguGCGGCGCc -3'
miRNA:   3'- uaGGAGGU-GGUGCACcUguCGCUGCG- -5'
29486 3' -57.5 NC_006151.1 + 52364 0.67 0.771525
Target:  5'- cGUCCgCCGgcgcgcccccggggcCCGCGgGGGCGGCgGGCGCc -3'
miRNA:   3'- -UAGGaGGU---------------GGUGCaCCUGUCG-CUGCG- -5'
29486 3' -57.5 NC_006151.1 + 137897 0.67 0.767783
Target:  5'- cUUCUUCGCCAagGUcGACGGCGGCGg -3'
miRNA:   3'- uAGGAGGUGGUg-CAcCUGUCGCUGCg -5'
29486 3' -57.5 NC_006151.1 + 64625 0.67 0.767783
Target:  5'- -gCCgCCgGCCGCG-GGGC-GCGGCGCc -3'
miRNA:   3'- uaGGaGG-UGGUGCaCCUGuCGCUGCG- -5'
29486 3' -57.5 NC_006151.1 + 39691 0.67 0.767783
Target:  5'- cGUgCUCC-CCAcCGUGGACGGC--UGCa -3'
miRNA:   3'- -UAgGAGGuGGU-GCACCUGUCGcuGCG- -5'
29486 3' -57.5 NC_006151.1 + 139083 0.67 0.767783
Target:  5'- --gCUCCGCCugG-GGGCGcGCauGGCGCu -3'
miRNA:   3'- uagGAGGUGGugCaCCUGU-CG--CUGCG- -5'
29486 3' -57.5 NC_006151.1 + 100796 0.68 0.758347
Target:  5'- --aCUCCACgAgGUGGcgggcgACGGCGAgGCg -3'
miRNA:   3'- uagGAGGUGgUgCACC------UGUCGCUgCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.