miRNA display CGI


Results 21 - 40 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29486 3' -57.5 NC_006151.1 + 127791 0.66 0.838251
Target:  5'- cUCCcccgCCGCCGCGc--GCGGgGGCGCg -3'
miRNA:   3'- uAGGa---GGUGGUGCaccUGUCgCUGCG- -5'
29486 3' -57.5 NC_006151.1 + 139636 0.66 0.838251
Target:  5'- cAUCCggcgCCGgCGCGggGGucGCGGCgGGCGCg -3'
miRNA:   3'- -UAGGa---GGUgGUGCa-CC--UGUCG-CUGCG- -5'
29486 3' -57.5 NC_006151.1 + 11678 0.66 0.837435
Target:  5'- gAUCCcugcgCCcgacgggGCCGCG-GGACGGCGcgugcgGCGCg -3'
miRNA:   3'- -UAGGa----GG-------UGGUGCaCCUGUCGC------UGCG- -5'
29486 3' -57.5 NC_006151.1 + 102753 0.66 0.835798
Target:  5'- -gCCaagCUGCCGCGcaagcuggcgcugaUGGuCGGCGACGCc -3'
miRNA:   3'- uaGGa--GGUGGUGC--------------ACCuGUCGCUGCG- -5'
29486 3' -57.5 NC_006151.1 + 73312 0.66 0.830009
Target:  5'- cGUCCgcgUCCAgCAUGggcgGGGCGccgcGCGugGCg -3'
miRNA:   3'- -UAGG---AGGUgGUGCa---CCUGU----CGCugCG- -5'
29486 3' -57.5 NC_006151.1 + 17389 0.66 0.830009
Target:  5'- uGUCCg-CACgACG-GGGCGcGUGGCGCg -3'
miRNA:   3'- -UAGGagGUGgUGCaCCUGU-CGCUGCG- -5'
29486 3' -57.5 NC_006151.1 + 36859 0.66 0.830009
Target:  5'- --aCUCgGCCuCGccggGGACGGCGGgGCg -3'
miRNA:   3'- uagGAGgUGGuGCa---CCUGUCGCUgCG- -5'
29486 3' -57.5 NC_006151.1 + 38590 0.66 0.830009
Target:  5'- -cCCgCCGCCcCGgGGACGGCGAgGa -3'
miRNA:   3'- uaGGaGGUGGuGCaCCUGUCGCUgCg -5'
29486 3' -57.5 NC_006151.1 + 97661 0.66 0.830009
Target:  5'- cUCCUggUCGCCGCG-GGccacGCAcGUGACGCu -3'
miRNA:   3'- uAGGA--GGUGGUGCaCC----UGU-CGCUGCG- -5'
29486 3' -57.5 NC_006151.1 + 109926 0.66 0.830009
Target:  5'- -aCCUCCGCCGcCGgccucuccccUGGGCGGCcucGGcCGCg -3'
miRNA:   3'- uaGGAGGUGGU-GC----------ACCUGUCG---CU-GCG- -5'
29486 3' -57.5 NC_006151.1 + 72353 0.66 0.829175
Target:  5'- cGUCg-CCGCCGCa-GGGCAGCGcgaccucGCGCa -3'
miRNA:   3'- -UAGgaGGUGGUGcaCCUGUCGC-------UGCG- -5'
29486 3' -57.5 NC_006151.1 + 106218 0.66 0.827502
Target:  5'- -cCCUCCccgaccugauggugGCCGCgGUGGcCGGCGAgccgaCGCa -3'
miRNA:   3'- uaGGAGG--------------UGGUG-CACCuGUCGCU-----GCG- -5'
29486 3' -57.5 NC_006151.1 + 113095 0.66 0.821589
Target:  5'- -gCCgCCGCCACcggGGGCGGgGcCGCg -3'
miRNA:   3'- uaGGaGGUGGUGca-CCUGUCgCuGCG- -5'
29486 3' -57.5 NC_006151.1 + 135858 0.66 0.821589
Target:  5'- -gCCUCaccgGgCACGUGGcCAGCGucCGCg -3'
miRNA:   3'- uaGGAGg---UgGUGCACCuGUCGCu-GCG- -5'
29486 3' -57.5 NC_006151.1 + 42661 0.66 0.821589
Target:  5'- cAUCC-CCGCCGCGgGGAUguguGCG-UGCg -3'
miRNA:   3'- -UAGGaGGUGGUGCaCCUGu---CGCuGCG- -5'
29486 3' -57.5 NC_006151.1 + 93947 0.66 0.821589
Target:  5'- cUUUUCCGCgACGgaGGcgcacuCGGCGACGCg -3'
miRNA:   3'- uAGGAGGUGgUGCa-CCu-----GUCGCUGCG- -5'
29486 3' -57.5 NC_006151.1 + 122906 0.66 0.821589
Target:  5'- -cCCUCgagCGCCuccuCGaGGGCGGCGACGa -3'
miRNA:   3'- uaGGAG---GUGGu---GCaCCUGUCGCUGCg -5'
29486 3' -57.5 NC_006151.1 + 63743 0.66 0.813
Target:  5'- -aCCUCCGgCGCGUcGGCGG-GGCGUc -3'
miRNA:   3'- uaGGAGGUgGUGCAcCUGUCgCUGCG- -5'
29486 3' -57.5 NC_006151.1 + 58365 0.66 0.813
Target:  5'- ---gUCCGCCGCGUcgugaucucgacGGAgAGCGcgGCGCa -3'
miRNA:   3'- uaggAGGUGGUGCA------------CCUgUCGC--UGCG- -5'
29486 3' -57.5 NC_006151.1 + 85142 0.66 0.813
Target:  5'- -aCCUggugCACCGCGUGcGGCAGggggcCGGCGCc -3'
miRNA:   3'- uaGGAg---GUGGUGCAC-CUGUC-----GCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.