miRNA display CGI


Results 21 - 40 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29486 3' -57.5 NC_006151.1 + 99459 0.71 0.558155
Target:  5'- -cCCUCUACggggACGU-GACGGCGGCGCu -3'
miRNA:   3'- uaGGAGGUGg---UGCAcCUGUCGCUGCG- -5'
29486 3' -57.5 NC_006151.1 + 62043 0.71 0.568161
Target:  5'- --gCUgCGCCGCGUGG-CGGUGcACGCg -3'
miRNA:   3'- uagGAgGUGGUGCACCuGUCGC-UGCG- -5'
29486 3' -57.5 NC_006151.1 + 98779 0.71 0.578212
Target:  5'- -gCCUgCGCUACGUGGcGCAGCacacaacugGGCGCu -3'
miRNA:   3'- uaGGAgGUGGUGCACC-UGUCG---------CUGCG- -5'
29486 3' -57.5 NC_006151.1 + 136688 0.7 0.587291
Target:  5'- uUCUUCCGCCACGUgcGGGCGcagcucaacauccGCGACa- -3'
miRNA:   3'- uAGGAGGUGGUGCA--CCUGU-------------CGCUGcg -5'
29486 3' -57.5 NC_006151.1 + 123173 0.7 0.588302
Target:  5'- -cCCUgCGCgugaACGUGuACGGCGACGCg -3'
miRNA:   3'- uaGGAgGUGg---UGCACcUGUCGCUGCG- -5'
29486 3' -57.5 NC_006151.1 + 103616 0.7 0.597409
Target:  5'- uUCCUCgCGCaCGCcgacgcgGUGG-CGGCGGCGCu -3'
miRNA:   3'- uAGGAG-GUG-GUG-------CACCuGUCGCUGCG- -5'
29486 3' -57.5 NC_006151.1 + 132015 0.7 0.598422
Target:  5'- gAUCCg-CACCugGUGcGAgagguagcCGGCGGCGCg -3'
miRNA:   3'- -UAGGagGUGGugCAC-CU--------GUCGCUGCG- -5'
29486 3' -57.5 NC_006151.1 + 101018 0.7 0.602478
Target:  5'- uUCCcCCACgCGCGUGuguuauuucagccauGACGGCcGACGCg -3'
miRNA:   3'- uAGGaGGUG-GUGCAC---------------CUGUCG-CUGCG- -5'
29486 3' -57.5 NC_006151.1 + 77528 0.7 0.607552
Target:  5'- -gCCUCgGCCgcGCGUGGGCcgccccgcaggggAGCGACGa -3'
miRNA:   3'- uaGGAGgUGG--UGCACCUG-------------UCGCUGCg -5'
29486 3' -57.5 NC_006151.1 + 98194 0.7 0.608568
Target:  5'- cAUCgUCgCGCCGCGcGGggucgagugcGCGGCGGCGCc -3'
miRNA:   3'- -UAGgAG-GUGGUGCaCC----------UGUCGCUGCG- -5'
29486 3' -57.5 NC_006151.1 + 64533 0.7 0.61873
Target:  5'- -gCCgCgGCCGCGUcggGGGCGGCGAgGCc -3'
miRNA:   3'- uaGGaGgUGGUGCA---CCUGUCGCUgCG- -5'
29486 3' -57.5 NC_006151.1 + 45447 0.7 0.61873
Target:  5'- cGUCgCaCgCACCGCG-GGGCGGCGACGg -3'
miRNA:   3'- -UAG-GaG-GUGGUGCaCCUGUCGCUGCg -5'
29486 3' -57.5 NC_006151.1 + 136819 0.7 0.61873
Target:  5'- -gCCgacgCGCCGCGcGGGCucuGCGACGCg -3'
miRNA:   3'- uaGGag--GUGGUGCaCCUGu--CGCUGCG- -5'
29486 3' -57.5 NC_006151.1 + 61455 0.7 0.628903
Target:  5'- cGUCCgCCGCCAUGUgcGGGCcGCGcaACGCc -3'
miRNA:   3'- -UAGGaGGUGGUGCA--CCUGuCGC--UGCG- -5'
29486 3' -57.5 NC_006151.1 + 28265 0.7 0.628903
Target:  5'- -gCCUCa--CACGUGGGCcccGGgGACGCg -3'
miRNA:   3'- uaGGAGgugGUGCACCUG---UCgCUGCG- -5'
29486 3' -57.5 NC_006151.1 + 64984 0.7 0.628903
Target:  5'- cGUCCagCAgCACGUGGccCAGCG-CGCa -3'
miRNA:   3'- -UAGGagGUgGUGCACCu-GUCGCuGCG- -5'
29486 3' -57.5 NC_006151.1 + 139493 0.7 0.639078
Target:  5'- --gCUCgCACCACGgucauggaGGACAGCGGCa- -3'
miRNA:   3'- uagGAG-GUGGUGCa-------CCUGUCGCUGcg -5'
29486 3' -57.5 NC_006151.1 + 70087 0.7 0.639078
Target:  5'- ----gUCugCGCGUGGGCGGCGaaggGCGCg -3'
miRNA:   3'- uaggaGGugGUGCACCUGUCGC----UGCG- -5'
29486 3' -57.5 NC_006151.1 + 53934 0.7 0.639078
Target:  5'- gGUUgUCCGCCGCGgcgagGGACuugaaccacgccAGCGGCGg -3'
miRNA:   3'- -UAGgAGGUGGUGCa----CCUG------------UCGCUGCg -5'
29486 3' -57.5 NC_006151.1 + 129433 0.69 0.649248
Target:  5'- cGUCCggCC-CCAaGUGGGCGG-GGCGCa -3'
miRNA:   3'- -UAGGa-GGuGGUgCACCUGUCgCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.