miRNA display CGI


Results 1 - 20 of 145 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29486 3' -57.5 NC_006151.1 + 45972 1.09 0.00191
Target:  5'- cAUCCUCCACCACGUGGACAGCGACGCu -3'
miRNA:   3'- -UAGGAGGUGGUGCACCUGUCGCUGCG- -5'
29486 3' -57.5 NC_006151.1 + 64449 0.78 0.248376
Target:  5'- -gCCUCCACCGucaGGAUGGCGGCGCg -3'
miRNA:   3'- uaGGAGGUGGUgcaCCUGUCGCUGCG- -5'
29486 3' -57.5 NC_006151.1 + 90685 0.77 0.273068
Target:  5'- uGUCCcCCGCgGCGgGGGCGGCGgACGCg -3'
miRNA:   3'- -UAGGaGGUGgUGCaCCUGUCGC-UGCG- -5'
29486 3' -57.5 NC_006151.1 + 31605 0.76 0.328278
Target:  5'- cUCCcCCGCCGCcUGGGCGGgGAUGCc -3'
miRNA:   3'- uAGGaGGUGGUGcACCUGUCgCUGCG- -5'
29486 3' -57.5 NC_006151.1 + 20759 0.75 0.366774
Target:  5'- -gCCUCCACCGCGgcGGAC-GCG-CGCc -3'
miRNA:   3'- uaGGAGGUGGUGCa-CCUGuCGCuGCG- -5'
29486 3' -57.5 NC_006151.1 + 109897 0.74 0.39132
Target:  5'- cAUCCUCCGCCGCG-GcGGCAGCa--GCa -3'
miRNA:   3'- -UAGGAGGUGGUGCaC-CUGUCGcugCG- -5'
29486 3' -57.5 NC_006151.1 + 129684 0.74 0.39132
Target:  5'- -aCCgUCCgGCCGcCGUGGACcGCGGCGCc -3'
miRNA:   3'- uaGG-AGG-UGGU-GCACCUGuCGCUGCG- -5'
29486 3' -57.5 NC_006151.1 + 70787 0.74 0.408268
Target:  5'- -gCCUCCggcaccggcgugGCCGuCGUGGGCAGCuaccGGCGCa -3'
miRNA:   3'- uaGGAGG------------UGGU-GCACCUGUCG----CUGCG- -5'
29486 3' -57.5 NC_006151.1 + 97479 0.74 0.416912
Target:  5'- cUCa-CCGCCACGUGGACGcGCaGCGCc -3'
miRNA:   3'- uAGgaGGUGGUGCACCUGU-CGcUGCG- -5'
29486 3' -57.5 NC_006151.1 + 60083 0.73 0.43453
Target:  5'- cAUCCcgcgcgCCGCCGCGaacgccggGcGGCAGCGGCGCu -3'
miRNA:   3'- -UAGGa-----GGUGGUGCa-------C-CUGUCGCUGCG- -5'
29486 3' -57.5 NC_006151.1 + 45189 0.73 0.43453
Target:  5'- -cCCgCCACCAC--GGACGGCGACGg -3'
miRNA:   3'- uaGGaGGUGGUGcaCCUGUCGCUGCg -5'
29486 3' -57.5 NC_006151.1 + 97969 0.73 0.441697
Target:  5'- cUCCUCCAggUCGCGgugguucuugccGGGCGGCGugGCc -3'
miRNA:   3'- uAGGAGGU--GGUGCa-----------CCUGUCGCugCG- -5'
29486 3' -57.5 NC_006151.1 + 2216 0.73 0.452572
Target:  5'- -gUCUCCACgGCGcccccGGCGGCGGCGCg -3'
miRNA:   3'- uaGGAGGUGgUGCac---CUGUCGCUGCG- -5'
29486 3' -57.5 NC_006151.1 + 136977 0.72 0.508993
Target:  5'- -gCUggCCGCCGCGccGGGCGGCgGGCGCg -3'
miRNA:   3'- uaGGa-GGUGGUGCa-CCUGUCG-CUGCG- -5'
29486 3' -57.5 NC_006151.1 + 132567 0.72 0.518691
Target:  5'- cUCCUCCuCCACGgccgGGACucGCGGCa- -3'
miRNA:   3'- uAGGAGGuGGUGCa---CCUGu-CGCUGcg -5'
29486 3' -57.5 NC_006151.1 + 90091 0.71 0.538299
Target:  5'- -gCCcCCGCCGCGccgcaGGccGCGGCGACGCc -3'
miRNA:   3'- uaGGaGGUGGUGCa----CC--UGUCGCUGCG- -5'
29486 3' -57.5 NC_006151.1 + 99541 0.71 0.538299
Target:  5'- -cCCgcCCACggagCACGUGGGC-GCGGCGCg -3'
miRNA:   3'- uaGGa-GGUG----GUGCACCUGuCGCUGCG- -5'
29486 3' -57.5 NC_006151.1 + 76939 0.71 0.548198
Target:  5'- uUCCg-CGCCACGaGGACGGCGcagacggccGCGCg -3'
miRNA:   3'- uAGGagGUGGUGCaCCUGUCGC---------UGCG- -5'
29486 3' -57.5 NC_006151.1 + 104802 0.71 0.548198
Target:  5'- cUCgUgCGCCGCGaccUGG-CGGCGGCGCg -3'
miRNA:   3'- uAGgAgGUGGUGC---ACCuGUCGCUGCG- -5'
29486 3' -57.5 NC_006151.1 + 99459 0.71 0.558155
Target:  5'- -cCCUCUACggggACGU-GACGGCGGCGCu -3'
miRNA:   3'- uaGGAGGUGg---UGCAcCUGUCGCUGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.