miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29486 3' -57.5 NC_006151.1 + 2087 0.69 0.699728
Target:  5'- -gCCUCCACCuuGaUGGGCccgAGCGGgcCGCg -3'
miRNA:   3'- uaGGAGGUGGugC-ACCUG---UCGCU--GCG- -5'
29486 3' -57.5 NC_006151.1 + 2216 0.73 0.452572
Target:  5'- -gUCUCCACgGCGcccccGGCGGCGGCGCg -3'
miRNA:   3'- uaGGAGGUGgUGCac---CUGUCGCUGCG- -5'
29486 3' -57.5 NC_006151.1 + 2559 0.66 0.854172
Target:  5'- uGUCCUugcagCCGuCCACgGUGGGgAGC-ACGCg -3'
miRNA:   3'- -UAGGA-----GGU-GGUG-CACCUgUCGcUGCG- -5'
29486 3' -57.5 NC_006151.1 + 3662 0.69 0.689709
Target:  5'- cGUCCUCCucGCCGucccCG-GGGCGGCGggccccggGCGCg -3'
miRNA:   3'- -UAGGAGG--UGGU----GCaCCUGUCGC--------UGCG- -5'
29486 3' -57.5 NC_006151.1 + 5430 0.66 0.838251
Target:  5'- cGUCCUUCucgggGCCGCG-GGcgacggucucgACGGCGACGg -3'
miRNA:   3'- -UAGGAGG-----UGGUGCaCC-----------UGUCGCUGCg -5'
29486 3' -57.5 NC_006151.1 + 6137 0.69 0.669539
Target:  5'- cUCCggccgCgGCCGCGaGGACGGCGGCc- -3'
miRNA:   3'- uAGGa----GgUGGUGCaCCUGUCGCUGcg -5'
29486 3' -57.5 NC_006151.1 + 6285 0.68 0.719588
Target:  5'- uUCCUCgGCCGCG---GCGGCGGcCGCc -3'
miRNA:   3'- uAGGAGgUGGUGCaccUGUCGCU-GCG- -5'
29486 3' -57.5 NC_006151.1 + 9487 0.68 0.709691
Target:  5'- -cCCgcggCCGCgGCGUGGGagAGCGGgGCg -3'
miRNA:   3'- uaGGa---GGUGgUGCACCUg-UCGCUgCG- -5'
29486 3' -57.5 NC_006151.1 + 10194 0.67 0.804247
Target:  5'- -gCCggUCGCgGCGcGGGCGGCGGCuGCa -3'
miRNA:   3'- uaGGa-GGUGgUGCaCCUGUCGCUG-CG- -5'
29486 3' -57.5 NC_006151.1 + 10652 0.66 0.838251
Target:  5'- cAUCC-CCGCCcagGCGgcgGGGgAGCGcggaGCGCg -3'
miRNA:   3'- -UAGGaGGUGG---UGCa--CCUgUCGC----UGCG- -5'
29486 3' -57.5 NC_006151.1 + 11228 0.69 0.679643
Target:  5'- cUUCUCCcggGCCGCGaGGGCcGCGGCGg -3'
miRNA:   3'- uAGGAGG---UGGUGCaCCUGuCGCUGCg -5'
29486 3' -57.5 NC_006151.1 + 11678 0.66 0.837435
Target:  5'- gAUCCcugcgCCcgacgggGCCGCG-GGACGGCGcgugcgGCGCg -3'
miRNA:   3'- -UAGGa----GG-------UGGUGCaCCUGUCGC------UGCG- -5'
29486 3' -57.5 NC_006151.1 + 17389 0.66 0.830009
Target:  5'- uGUCCg-CACgACG-GGGCGcGUGGCGCg -3'
miRNA:   3'- -UAGGagGUGgUGCaCCUGU-CGCUGCG- -5'
29486 3' -57.5 NC_006151.1 + 20759 0.75 0.366774
Target:  5'- -gCCUCCACCGCGgcGGAC-GCG-CGCc -3'
miRNA:   3'- uaGGAGGUGGUGCa-CCUGuCGCuGCG- -5'
29486 3' -57.5 NC_006151.1 + 21958 0.69 0.699728
Target:  5'- gGUCCaCCACaucgGCGUGGu--GCGGCGCc -3'
miRNA:   3'- -UAGGaGGUGg---UGCACCuguCGCUGCG- -5'
29486 3' -57.5 NC_006151.1 + 22997 0.68 0.719588
Target:  5'- -aUCUCgGCCGCGcgGGugGG-GGCGCg -3'
miRNA:   3'- uaGGAGgUGGUGCa-CCugUCgCUGCG- -5'
29486 3' -57.5 NC_006151.1 + 26341 0.66 0.846307
Target:  5'- -cCCgCC-UCACG-GGGCGGCGGCGg -3'
miRNA:   3'- uaGGaGGuGGUGCaCCUGUCGCUGCg -5'
29486 3' -57.5 NC_006151.1 + 28265 0.7 0.628903
Target:  5'- -gCCUCa--CACGUGGGCcccGGgGACGCg -3'
miRNA:   3'- uaGGAGgugGUGCACCUG---UCgCUGCG- -5'
29486 3' -57.5 NC_006151.1 + 31605 0.76 0.328278
Target:  5'- cUCCcCCGCCGCcUGGGCGGgGAUGCc -3'
miRNA:   3'- uAGGaGGUGGUGcACCUGUCgCUGCG- -5'
29486 3' -57.5 NC_006151.1 + 36859 0.66 0.830009
Target:  5'- --aCUCgGCCuCGccggGGACGGCGGgGCg -3'
miRNA:   3'- uagGAGgUGGuGCa---CCUGUCGCUgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.