miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29486 3' -57.5 NC_006151.1 + 142979 0.69 0.699728
Target:  5'- -aCCUCCuGCCGCG-GGugGGCccGACcGCa -3'
miRNA:   3'- uaGGAGG-UGGUGCaCCugUCG--CUG-CG- -5'
29486 3' -57.5 NC_006151.1 + 141690 0.68 0.729412
Target:  5'- -gCCUcCCACgGCGgcuGGCGGCGgACGCg -3'
miRNA:   3'- uaGGA-GGUGgUGCac-CUGUCGC-UGCG- -5'
29486 3' -57.5 NC_006151.1 + 141573 0.68 0.7488
Target:  5'- gAUCCUCCGCCGCuccuccccccGGGCgagagccgcccGGCGAgGCu -3'
miRNA:   3'- -UAGGAGGUGGUGca--------CCUG-----------UCGCUgCG- -5'
29486 3' -57.5 NC_006151.1 + 141495 0.67 0.807767
Target:  5'- -gCCUCCGcggcgacgggcgucuCCACGgGGGCcgaGGCGACGg -3'
miRNA:   3'- uaGGAGGU---------------GGUGCaCCUG---UCGCUGCg -5'
29486 3' -57.5 NC_006151.1 + 140199 0.68 0.7488
Target:  5'- cAUCguggCCACCGCGgGGGCGGUGcUGCa -3'
miRNA:   3'- -UAGga--GGUGGUGCaCCUGUCGCuGCG- -5'
29486 3' -57.5 NC_006151.1 + 139636 0.66 0.838251
Target:  5'- cAUCCggcgCCGgCGCGggGGucGCGGCgGGCGCg -3'
miRNA:   3'- -UAGGa---GGUgGUGCa-CC--UGUCG-CUGCG- -5'
29486 3' -57.5 NC_006151.1 + 139493 0.7 0.639078
Target:  5'- --gCUCgCACCACGgucauggaGGACAGCGGCa- -3'
miRNA:   3'- uagGAG-GUGGUGCa-------CCUGUCGCUGcg -5'
29486 3' -57.5 NC_006151.1 + 139083 0.67 0.767783
Target:  5'- --gCUCCGCCugG-GGGCGcGCauGGCGCu -3'
miRNA:   3'- uagGAGGUGGugCaCCUGU-CG--CUGCG- -5'
29486 3' -57.5 NC_006151.1 + 137897 0.67 0.767783
Target:  5'- cUUCUUCGCCAagGUcGACGGCGGCGg -3'
miRNA:   3'- uAGGAGGUGGUg-CAcCUGUCGCUGCg -5'
29486 3' -57.5 NC_006151.1 + 137842 0.67 0.777101
Target:  5'- --aCUUCACCuuCGUGGACacgGGCGuguACGCg -3'
miRNA:   3'- uagGAGGUGGu-GCACCUG---UCGC---UGCG- -5'
29486 3' -57.5 NC_006151.1 + 136977 0.72 0.508993
Target:  5'- -gCUggCCGCCGCGccGGGCGGCgGGCGCg -3'
miRNA:   3'- uaGGa-GGUGGUGCa-CCUGUCG-CUGCG- -5'
29486 3' -57.5 NC_006151.1 + 136819 0.7 0.61873
Target:  5'- -gCCgacgCGCCGCGcGGGCucuGCGACGCg -3'
miRNA:   3'- uaGGag--GUGGUGCaCCUGu--CGCUGCG- -5'
29486 3' -57.5 NC_006151.1 + 136688 0.7 0.587291
Target:  5'- uUCUUCCGCCACGUgcGGGCGcagcucaacauccGCGACa- -3'
miRNA:   3'- uAGGAGGUGGUGCA--CCUGU-------------CGCUGcg -5'
29486 3' -57.5 NC_006151.1 + 136492 0.66 0.854172
Target:  5'- cGUCCUCCGggacuacaucucCCACGaccgGGGCAGCcucaagcuccccGACcGCg -3'
miRNA:   3'- -UAGGAGGU------------GGUGCa---CCUGUCG------------CUG-CG- -5'
29486 3' -57.5 NC_006151.1 + 135858 0.66 0.821589
Target:  5'- -gCCUCaccgGgCACGUGGcCAGCGucCGCg -3'
miRNA:   3'- uaGGAGg---UgGUGCACCuGUCGCu-GCG- -5'
29486 3' -57.5 NC_006151.1 + 135671 0.69 0.669539
Target:  5'- cGUCCUguaCGCCAC--GGACGGCuGCGCg -3'
miRNA:   3'- -UAGGAg--GUGGUGcaCCUGUCGcUGCG- -5'
29486 3' -57.5 NC_006151.1 + 135352 0.66 0.854172
Target:  5'- uGUCCgcgagCCGCCGCGcguUGGccGCGuGCGcCGCg -3'
miRNA:   3'- -UAGGa----GGUGGUGC---ACC--UGU-CGCuGCG- -5'
29486 3' -57.5 NC_006151.1 + 135071 0.69 0.669539
Target:  5'- uUCCcCCGCCuccuCGggcggGGGCGGCGGgGCc -3'
miRNA:   3'- uAGGaGGUGGu---GCa----CCUGUCGCUgCG- -5'
29486 3' -57.5 NC_006151.1 + 134537 0.68 0.7488
Target:  5'- cGUCUUCC-CCACGcccugGGAgAGCGGCcCg -3'
miRNA:   3'- -UAGGAGGuGGUGCa----CCUgUCGCUGcG- -5'
29486 3' -57.5 NC_006151.1 + 132567 0.72 0.518691
Target:  5'- cUCCUCCuCCACGgccgGGACucGCGGCa- -3'
miRNA:   3'- uAGGAGGuGGUGCa---CCUGu-CGCUGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.