miRNA display CGI


Results 21 - 40 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29486 3' -57.5 NC_006151.1 + 37380 0.69 0.699728
Target:  5'- -cCCUCCggccgacgGCCGCGUccgcuACGGCGGCGCc -3'
miRNA:   3'- uaGGAGG--------UGGUGCAcc---UGUCGCUGCG- -5'
29486 3' -57.5 NC_006151.1 + 38525 0.69 0.689709
Target:  5'- cUCCcCCGCCGcCGgcccGGACccagcgcccgAGCGGCGCa -3'
miRNA:   3'- uAGGaGGUGGU-GCa---CCUG----------UCGCUGCG- -5'
29486 3' -57.5 NC_006151.1 + 38590 0.66 0.830009
Target:  5'- -cCCgCCGCCcCGgGGACGGCGAgGa -3'
miRNA:   3'- uaGGaGGUGGuGCaCCUGUCGCUgCg -5'
29486 3' -57.5 NC_006151.1 + 38833 0.69 0.699728
Target:  5'- -gCUUCCGCCGCGUcccGGcCGGCGAgacccacacgcCGCg -3'
miRNA:   3'- uaGGAGGUGGUGCA---CCuGUCGCU-----------GCG- -5'
29486 3' -57.5 NC_006151.1 + 39597 0.66 0.846307
Target:  5'- -gCCUCUGCCGCcaGGACAaCGuGCGCu -3'
miRNA:   3'- uaGGAGGUGGUGcaCCUGUcGC-UGCG- -5'
29486 3' -57.5 NC_006151.1 + 39691 0.67 0.767783
Target:  5'- cGUgCUCC-CCAcCGUGGACGGC--UGCa -3'
miRNA:   3'- -UAgGAGGuGGU-GCACCUGUCGcuGCG- -5'
29486 3' -57.5 NC_006151.1 + 40396 0.69 0.679643
Target:  5'- cUCCUCCuCUGCGUccGCGGCGGCGg -3'
miRNA:   3'- uAGGAGGuGGUGCAccUGUCGCUGCg -5'
29486 3' -57.5 NC_006151.1 + 42661 0.66 0.821589
Target:  5'- cAUCC-CCGCCGCGgGGAUguguGCG-UGCg -3'
miRNA:   3'- -UAGGaGGUGGUGCaCCUGu---CGCuGCG- -5'
29486 3' -57.5 NC_006151.1 + 45189 0.73 0.43453
Target:  5'- -cCCgCCACCAC--GGACGGCGACGg -3'
miRNA:   3'- uaGGaGGUGGUGcaCCUGUCGCUGCg -5'
29486 3' -57.5 NC_006151.1 + 45447 0.7 0.61873
Target:  5'- cGUCgCaCgCACCGCG-GGGCGGCGACGg -3'
miRNA:   3'- -UAG-GaG-GUGGUGCaCCUGUCGCUGCg -5'
29486 3' -57.5 NC_006151.1 + 45972 1.09 0.00191
Target:  5'- cAUCCUCCACCACGUGGACAGCGACGCu -3'
miRNA:   3'- -UAGGAGGUGGUGCACCUGUCGCUGCG- -5'
29486 3' -57.5 NC_006151.1 + 49664 0.67 0.795341
Target:  5'- -cCCUCCggGCCGCGcccggaGGAC-GCGgACGCg -3'
miRNA:   3'- uaGGAGG--UGGUGCa-----CCUGuCGC-UGCG- -5'
29486 3' -57.5 NC_006151.1 + 50367 0.66 0.854172
Target:  5'- -gUCUCCGCCgGCGgGGGCGa-GACGCg -3'
miRNA:   3'- uaGGAGGUGG-UGCaCCUGUcgCUGCG- -5'
29486 3' -57.5 NC_006151.1 + 52364 0.67 0.771525
Target:  5'- cGUCCgCCGgcgcgcccccggggcCCGCGgGGGCGGCgGGCGCc -3'
miRNA:   3'- -UAGGaGGU---------------GGUGCaCCUGUCG-CUGCG- -5'
29486 3' -57.5 NC_006151.1 + 52593 0.69 0.679643
Target:  5'- -gCCgcCCugCGCGUGGACgaaGGCGucguCGCg -3'
miRNA:   3'- uaGGa-GGugGUGCACCUG---UCGCu---GCG- -5'
29486 3' -57.5 NC_006151.1 + 53764 0.67 0.780792
Target:  5'- --aCgCCGCCgagagcuuggcguagACGUucuGGGCGGCGACGCg -3'
miRNA:   3'- uagGaGGUGG---------------UGCA---CCUGUCGCUGCG- -5'
29486 3' -57.5 NC_006151.1 + 53934 0.7 0.639078
Target:  5'- gGUUgUCCGCCGCGgcgagGGACuugaaccacgccAGCGGCGg -3'
miRNA:   3'- -UAGgAGGUGGUGCa----CCUG------------UCGCUGCg -5'
29486 3' -57.5 NC_006151.1 + 54804 0.66 0.838251
Target:  5'- -cCCggcaCCGgCGCGUGcuGGCGcGCGACGCg -3'
miRNA:   3'- uaGGa---GGUgGUGCAC--CUGU-CGCUGCG- -5'
29486 3' -57.5 NC_006151.1 + 57509 0.66 0.838251
Target:  5'- --gCUCgGCCGCG-GcGGCGGCGGcCGCc -3'
miRNA:   3'- uagGAGgUGGUGCaC-CUGUCGCU-GCG- -5'
29486 3' -57.5 NC_006151.1 + 57610 0.69 0.669539
Target:  5'- -gCCUCgGCCGCGgccgccucGACGGCG-CGCg -3'
miRNA:   3'- uaGGAGgUGGUGCac------CUGUCGCuGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.